Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18250 323 / 2e-98 receptor serine/threonine kinase, putative (.1) AT5G38280 315 / 1e-97 PR5K PR5-like receptor kinase (.1) AT1G70250 311 / 1e-94 receptor serine/threonine kinase, putative (.1) AT1G66910 305 / 1e-93 Protein kinase superfamily protein (.1) AT1G66980 313 / 4e-93 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT5G38260 302 / 9e-93 Protein kinase superfamily protein (.1) AT1G66930 303 / 1e-92 Protein kinase superfamily protein (.1) AT1G66920 300 / 2e-92 Protein kinase superfamily protein (.1.2) AT5G39020 304 / 8e-92 Malectin/receptor-like protein kinase family protein (.1) AT1G67000 305 / 2e-91 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G009500 [exp] 894 / 0 AT5G38280 327 / 3e-102 PR5-like receptor kinase (.1) Potri.007G141125 [exp] 800 / 0 AT5G38280 335 / 9e-105 PR5-like receptor kinase (.1) Potri.007G117050 [exp] 783 / 0 AT5G38280 338 / 5e-106 PR5-like receptor kinase (.1) Potri.007G141450 [exp] 769 / 0 AT5G38280 336 / 2e-105 PR5-like receptor kinase (.1) Potri.017G009400 [exp] 663 / 0 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.017G009100 [exp] 660 / 0 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.017G008800 [exp] 630 / 0 AT5G38280 330 / 1e-103 PR5-like receptor kinase (.1) Potri.017G007900 [exp] 603 / 0 AT5G38260 324 / 1e-101 Protein kinase superfamily protein (.1) Potri.015G122000 [exp] 593 / 0 AT5G38280 336 / 2e-110 PR5-like receptor kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025492 [exp] 456 / 2e-151 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10014924 [exp] 450 / 1e-149 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10022359 [exp] 424 / 3e-140 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008335 [exp] 419 / 1e-136 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10025545 [exp] 405 / 3e-136 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10008362 [exp] 385 / 8e-126 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10027085 [exp] 321 / 2e-104 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025554 [exp] 327 / 6e-104 AT5G38260 220 / 2e-64 Protein kinase superfamily protein (.1) Lus10025547 [exp] 327 / 8e-103 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10026761 [exp] 321 / 4e-101 AT1G67000 334 / 4e-107 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.017G009600.1 pacid=42814061 polypeptide=Potri.017G009600.1.p locus=Potri.017G009600 ID=Potri.017G009600.1.v4.1 annot-version=v4.1 ATGTTCAGTGCCATATTAAGGCACCTCTTTGGTGCGCATGTAGCCCTTCTCTTGCTAGTTACCCTATCCACCCACCATTCTTGCAGTGCTAGAAAGAACA TCAATGACTGCGCTCCTTCTTCTTGTGGCAATATCCGTAATATTAGCTACCCTTTTCGATTAAAAACCGATCCCAAAGGCTGTGGCAACCAAAATTTTGA ACTTGATTGTGAAAACAACGTTCGTCCAACTTTAATCTTGAACAAGGTAAAGTATTATGTTCAGGCAATCAGGTACAGTGACTTCACAATTCGACTTGTG GATGCTTCTGTTCAGAAGGATGATTGCTTCTCCCTTCCTCATCAACTCGTGGATTATCGTCCATATAAGTTTTTCAGCTCAATCGTTGACTTTCCTAAGT TGATTTTTATAACTTGCGAAAATCAAATACCGAGTCCTCCAGATTATATTTTGGATACCAGTTCTTGCATAAATGGCAATTCGACTGCATATAATTCTGC CTTTTCTAGCAGTGTTTCTTCTCCCAGATCCATCAATATGGAAGGTCATTCCTACGTCATGGTTGGTGCCGACTTGCTGGATGTGCCGGACTTATGCCTT ATAAATTTGATTTATTTTTTGCCTCGATCTCTTCTGCCAGAAAACAAAGCCAATATGTCGTATACTGATGTCCATGATATTTTGGTGGATGGGTTCGAGC TTTCATGGTTCTCATTCTGCTGTGATTCTGTCAAAGAGCACCGCTGCAGTTATCTTGATGAAGCCACCGCGGACAAGAACAGTTGTGGATATTCATTCTA CTCCAACATCATGGATGATCCGATCAGAGTTGTAACAGAATTTCTGGCTGATGAGGTACTCACAAAACTTGGGCGAAAAACCTGGTATTTACAAGATATC TGGCTGACATTTGATCAAACCAAGGGAAAACGGTATTTGGAATTCGGCTTGGTCACAAAAAATGGTCATTACATGACGGGCACCATCTCTTCAAATTTAC TAAGCATCCTCACAGTTTTGCTCATTACGTTACTTCTCCTCATTGGGATATATCGTGCACTTTTATTCCTTTCTGGGTTTTCATGTCTCGTAATTTTACT GATCTACAAATGGAGAAGAAGACATTTATTAATGTATGACAACATTGAAAAATTCTTGCAAAGCCATGAAAATGATCTCATGCCAATAAGATACTCTTAT TCAGAGATCAAGAAGATAACAACTGGATTTAGAGACAAGTTGGGTGAAGGAGGCTTTGGCTTAGTATATAAAGGAAAGCTTCGTAGTGGTCGTTTTGCAG CGGTTAAAGTATTGGGCAAGTCAAAAGCCAATGGACAAGATTTTATCAACGAAGTTGCCACAATTGGAAGAATCCACCATGTCAATGTTGTGCAACTCAT AGGCTTTACAGTTGAGGGATCGAAACGTGCTCTTATATATGAATTCATGCCTAATGGGTCTCTTGAAAAGTACATTTTTTCCAAGCAAGGTAGTGTCCCA CTAAGCAATGAGAGAATATATGAGATTTCTCTTAGGGTGGCTCGTGGCATTGAATATCTACATCAAGGTTGTGATATGCAGATTTTGCATTTTGATATCA AGCCACACAACATTTTGCTTGATGAAAAATTTGTTCCAAAAATATCAGATTTTGGACTAGCAAAATTGTACCCAACATCTAATAACACTGTGCCCCTCAC TGCCGCCAGAGGAACGATAGGATACATGGCTCCTGAACTATTTTATAAAAATATTGGAGGTGTCTCTTACAAAGCAGATGTCTATAGTTTTAGGATGTTA TTGATGGACATGGTAGGAAGAAGGAAGAACTTGAATGCATTGGCAAATCATTCAAGCCAAATTTACTTTCCTTCATGGGTTTATGAGCAAGTTAGTGCAG GCAATGACATAGAAGTACAAGAAAATACCACAGAATATGAAAAGAAAACTACAAAGAAGATGATTATTGTGGCATTATGGTGTATACAGCTAAAACCTAG TGATCGTCCCTCAATGCATAAAGTTGTAGAGATGCTTGAGTCAGATGTTGAATCCCTACAAATGCCTCCCAAGCCTTTTCTCACCCTACAACATATACCA GAAGATGATGATAGGGATAATCCAGCAAAGTTATCAGATCCACCAAATGATTGTATCGACTCTTCATATCAATTTGGTCGTTAA
AA sequence Show only first row Show all	>Potri.017G009600.1 pacid=42814061 polypeptide=Potri.017G009600.1.p locus=Potri.017G009600 ID=Potri.017G009600.1.v4.1 annot-version=v4.1 MFSAILRHLFGAHVALLLLVTLSTHHSCSARKNINDCAPSSCGNIRNISYPFRLKTDPKGCGNQNFELDCENNVRPTLILNKVKYYVQAIRYSDFTIRLV DASVQKDDCFSLPHQLVDYRPYKFFSSIVDFPKLIFITCENQIPSPPDYILDTSSCINGNSTAYNSAFSSSVSSPRSINMEGHSYVMVGADLLDVPDLCL INLIYFLPRSLLPENKANMSYTDVHDILVDGFELSWFSFCCDSVKEHRCSYLDEATADKNSCGYSFYSNIMDDPIRVVTEFLADEVLTKLGRKTWYLQDI WLTFDQTKGKRYLEFGLVTKNGHYMTGTISSNLLSILTVLLITLLLLIGIYRALLFLSGFSCLVILLIYKWRRRHLLMYDNIEKFLQSHENDLMPIRYSY SEIKKITTGFRDKLGEGGFGLVYKGKLRSGRFAAVKVLGKSKANGQDFINEVATIGRIHHVNVVQLIGFTVEGSKRALIYEFMPNGSLEKYIFSKQGSVP LSNERIYEISLRVARGIEYLHQGCDMQILHFDIKPHNILLDEKFVPKISDFGLAKLYPTSNNTVPLTAARGTIGYMAPELFYKNIGGVSYKADVYSFRML LMDMVGRRKNLNALANHSSQIYFPSWVYEQVSAGNDIEVQENTTEYEKKTTKKMIIVALWCIQLKPSDRPSMHKVVEMLESDVESLQMPPKPFLTLQHIP EDDDRDNPAKLSDPPNDCIDSSYQFGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18250			receptor serine/threonine kina...		Potri.017G009600 [exp]	0	1
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Potri.006G236000 [exp]	3.00	0.9531
AT3G55646			unknown protein		Potri.008G061700 [exp]	5.47	0.9567
					Potri.018G131900 [exp]	8.48	0.9479
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Potri.006G058500 [exp]	9.16	0.9390
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.001G003100 [exp]	9.27	0.9304
AT2G16060		ATGLB1, ARATHGL...	CLASS I HEMOGLOBIN, hemoglobin...		Potri.009G110800 [exp]	13.19	0.9364
AT2G31083		AtCLE5, CLE5, C...	CLAVATA3/ESR-RELATED 5 (.1)		Potri.001G376200 [exp]	15.96	0.9257
					Potri.001G227750 [exp]	16.43	0.9502
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.004G179514 [exp]	16.73	0.9410
AT4G35160			O-methyltransferase family pro...		Potri.019G093200 [exp]	21.63	0.9254

Compare expression of checked genes

Potri.017G009600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.