Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05690 451 / 8e-159 BT3 BTB and TAZ domain protein 3 (.1) AT5G67480 402 / 4e-139 ATBT4, BT4 BTB and TAZ domain protein 4 (.1.2) AT4G37610 349 / 2e-118 BT5 BTB and TAZ domain protein 5 (.1) AT3G48360 264 / 2e-85 ATBT2, BT2 BTB and TAZ domain protein 2 (.1) AT5G63160 261 / 6e-84 BT1 BTB and TAZ domain protein 1 (.1) AT1G79000 72 / 3e-13 ATHAC1, ATHPCAT2, PCAT2, HAC1 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) AT3G12980 72 / 3e-13 HAC5 ,ATHPCAT4 histone acetyltransferase of the CBP family 5 (.1) AT1G16710 65 / 6e-11 HAC12 histone acetyltransferase of the CBP family 12 (.1.2) AT3G56230 54 / 4e-08 BTB/POZ domain-containing protein (.1) AT4G08455 51 / 5e-07 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G140400 [exp] 746 / 0 AT1G05690 407 / 3e-141 BTB and TAZ domain protein 3 (.1) Potri.007G055100 [exp] 384 / 9e-132 AT5G67480 438 / 2e-153 BTB and TAZ domain protein 4 (.1.2) Potri.015G087700 [exp] 284 / 4e-93 AT5G63160 404 / 8e-141 BTB and TAZ domain protein 1 (.1) Potri.012G091400 [exp] 279 / 5e-91 AT5G63160 404 / 7e-141 BTB and TAZ domain protein 1 (.1) Potri.014G000500 [exp] 71 / 5e-13 AT1G79000 1829 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Potri.007G003400 [exp] 71 / 5e-13 AT1G79000 1847 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Potri.001G468700 [exp] 59 / 1e-09 AT1G55760 522 / 0.0 BTB/POZ domain-containing protein (.1) Potri.004G104201 [exp] 56 / 5e-08 AT1G79000 860 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Potri.005G183600 [exp] 50 / 1e-06 AT4G08455 342 / 2e-119 BTB/POZ domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019299 [exp] 424 / 2e-147 AT5G67480 487 / 7e-173 BTB and TAZ domain protein 4 (.1.2) Lus10011523 [exp] 418 / 4e-145 AT5G67480 482 / 6e-171 BTB and TAZ domain protein 4 (.1.2) Lus10025196 [exp] 379 / 1e-129 AT5G67480 425 / 9e-149 BTB and TAZ domain protein 4 (.1.2) Lus10018087 [exp] 283 / 1e-92 AT3G48360 388 / 1e-134 BTB and TAZ domain protein 2 (.1) Lus10042082 [exp] 282 / 2e-92 AT3G48360 388 / 1e-134 BTB and TAZ domain protein 2 (.1) Lus10013670 [exp] 267 / 1e-86 AT3G48360 371 / 6e-128 BTB and TAZ domain protein 2 (.1) Lus10033038 [exp] 140 / 1e-39 AT5G63160 184 / 5e-57 BTB and TAZ domain protein 1 (.1) Lus10034780 [exp] 74 / 1e-13 AT1G79000 1715 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Lus10033321 [exp] 73 / 2e-13 AT1G79000 1965 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Lus10033319 [exp] 71 / 8e-13 AT1G79000 1952 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] PF02135 [poplar] [flax] zf-TAZ TAZ zinc finger
Representative CDS sequence Show only first row Show all	>Potri.017G009700.1 pacid=42814439 polypeptide=Potri.017G009700.1.p locus=Potri.017G009700 ID=Potri.017G009700.1.v4.1 annot-version=v4.1 ATGGCTTCACCAGATGTCGATTCTCCTTGGCTCTGTGCTGCTAATGAATCTTTTGGTGGATGTTTCAATATGCAAATAGAGGAGATCAAATCAGCCAATG TTTTAAATGTGCTGGAAGCTCCCTCATCTTCTATGTCTGATACCTGTAATATCCCCAAGCCACCACCTTATCCTAATAAAACATCTAAAGCAGCCAACAA TTGTAAAAGGATTTTAGAGACTTGCTCTGTGCCACGGGAAATTAAAGATACATGGGACAGGCTATTCAAGGAAGCATATGGTGTAGATGTCTACATTATC ACTGATAGCAAATCGTATATTCCAGCTCATTGCAATGTTCTGAGTATTTCATCACCTGTGCTAGGGAATATCCTGCAGCGTTCGAAAGTTAAAGATGGTA TTAGATACATCAAAATTCTTGGTGTACCTTGTGAAGCCGTCTACATGTTCATCCGGTTTTTGTACTCATCCTGCTATGAAGAGGATGAGATGAAGAAGTT CGTTCTCCATCTGATGGTTTTATCACACTCATACTCAATCCCATCACTGAAAAGAGTTTGTATAGACTTTCTGGAGCAGGATTATCTGACCAAGGAAAAT GTGATAGACGTGCTTCAGTTAGCAAGGAGCTGCAATGCACCACGACTCTCCTTCATTTGTGTTCGTATGGTTGTGAAGGACTTGAAAACTATATCATCAA CTGAAGGTTGGAAAGTTATGAAGCGTGCTAACCCTGCCCTCGAACAAGAGCTTGTAGAATCTGTTGTTGAAGCAGATTCGAGAAAACAAGAGAGGTTGAG GAAAATAGAAGAGAGAAAAGTGTACTTGCAACTGTATGAAGCAATGGAGGCTCTCCTTCACATATGCAGGGACGGGTGTAGGACAATTGGACCTAGTGAC AAAATGCTTAAAGGAAGCCAAGTTCCCTGCAACTTTCCTGCTTGCAAAGGACTTGAGTCCTTGGTTCGTCATTTCTCTAATTGTAAGACTCGGGTTCCCA GGGGCTGTGTTCACTGCAAACGCATGTGGCAGCTTCTTGAACTGCATTCTCGCATGTGCAACGACCCAGATTACTGCAAGGTCCCGCTTTGTAGGCATTT CAAGGAAAAAATGCAGCAGCAAACGAAGAAAGACGAAGCTAAGTGGAAACTGCTGGTCAGCAAAGTAATAGCAGCAAAGAACGCATTGGGGCCATTCTCA GCTCGCCCTGTAGATTTATTCTGA
AA sequence Show only first row Show all	>Potri.017G009700.1 pacid=42814439 polypeptide=Potri.017G009700.1.p locus=Potri.017G009700 ID=Potri.017G009700.1.v4.1 annot-version=v4.1 MASPDVDSPWLCAANESFGGCFNMQIEEIKSANVLNVLEAPSSSMSDTCNIPKPPPYPNKTSKAANNCKRILETCSVPREIKDTWDRLFKEAYGVDVYII TDSKSYIPAHCNVLSISSPVLGNILQRSKVKDGIRYIKILGVPCEAVYMFIRFLYSSCYEEDEMKKFVLHLMVLSHSYSIPSLKRVCIDFLEQDYLTKEN VIDVLQLARSCNAPRLSFICVRMVVKDLKTISSTEGWKVMKRANPALEQELVESVVEADSRKQERLRKIEERKVYLQLYEAMEALLHICRDGCRTIGPSD KMLKGSQVPCNFPACKGLESLVRHFSNCKTRVPRGCVHCKRMWQLLELHSRMCNDPDYCKVPLCRHFKEKMQQQTKKDEAKWKLLVSKVIAAKNALGPFS ARPVDLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05690		BT3	BTB and TAZ domain protein 3 (...		Potri.017G009700 [exp]	0	1
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.019G006570 [exp]	2.23	0.7857
AT1G51350			ARM repeat superfamily protein...		Potri.009G053400 [exp]	3.16	0.7501
AT1G08170			Histone superfamily protein (....		Potri.001G212200 [exp]	6.48	0.7605
AT5G66770	GRAS		GRAS family transcription fact...		Potri.007G026300 [exp]	6.92	0.6835
					Potri.019G129350 [exp]	9.27	0.7694
AT5G26010			Protein phosphatase 2C family ...		Potri.006G232700 [exp]	10.39	0.6910
AT3G11760			unknown protein		Potri.010G244100 [exp]	11.48	0.7594
AT1G12620			Pentatricopeptide repeat (PPR)...		Potri.005G047200 [exp]	11.83	0.7063
AT4G19670			RING/U-box superfamily protein...		Potri.012G119000 [exp]	16.15	0.7381
AT2G38920			SPX (SYG1/Pho81/XPR1) domain-c...		Potri.016G064600 [exp]	20.85	0.7025

Compare expression of checked genes

Potri.017G009700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.