Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30720 572 / 0 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1) AT5G48370 506 / 6e-177 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G240100 [exp] 541 / 0 AT5G48370 664 / 0.0 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1.2) Potri.014G174800 [exp] 532 / 0 AT5G48370 690 / 0.0 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002148 [exp] 536 / 0 AT5G48370 664 / 0.0 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1.2) Lus10008741 [exp] 290 / 5e-94 AT5G48370 360 / 3e-123 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1.2) Lus10008740 [exp] 184 / 1e-55 AT5G48370 232 / 5e-76 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G009800.1 pacid=42813770 polypeptide=Potri.017G009800.1.p locus=Potri.017G009800 ID=Potri.017G009800.1.v4.1 annot-version=v4.1 ATGAGACCACTGAGAAAATCACTCCTTGAACCTAACCCTAAATCATCATCACTCCACAAAGCCCTTTCATCACAGTTCACTTACTCTCTTGATCGGCCTC CAGCACCAAAACCCCACTTCAATGAGACCACCAACACCCACTTTCCATTTTCAAGAAACCAACAAAAACATCACTCCAACAATGGACAAACCAATACCCT CTTGTTCAATTCACTACACAAACTAAAACCCACTTCAAGTACTTTGTTGTCTAGCCAAACGAGGTTGTTTTCATGTTCAAGTTCGTTTTTTTCGCTTTCA AGATCTCATTTTGGCAAAGAACCCGTCTTTAAAGTTATATTTCATGATCCAATCTCTAGTAAATTCATTCAAAGAAGGGCCTTTTCAAGTGAAAATCCAA ACCCGGAAAATGCTGTGTCAGGGGAGAACTCACAGCCGATTGATGCAGGGTCTTCTATGAGAAAACCAATTAGTTTGTGGCCTGGAATGTACCATTCTCC TGTGTCTAATGCCTTATGGGAAGCAAGATCAAGGATTTTTGAGGAGCCTAATGATTCTGGGACTTCAGAGACTGAATTGGTTGCGAAAAGTCCATCAAAG AGCAGGACTAGCATTTGTTATAAGTTTTCTTCTGATTTTATACTTAGAGAGCAGTATAGGAATCCATGGAATAAGATTAGAATGGGGAAGTTGGTTGAAG ATCTTGATGCTCTTGCTGGAACCATTTCCTATAAGCATTGCTGCAATGATGATGGCTCAACTAGGCCTTTGCTATTGGTCACTGCTTCTGTTGATAGGAT AGTTTTGAAAAAACCAATCCTTGTTGATGCTGATTTGACTATAGTTGGTGCTGTTACATGGGTTGGGAGGTCATCCATGGAGATTCAGATGGAAGTGATT CAGCCCACTGAAGGGGCCACCAATCCATCAGATGCAGTTGCTCTTGTAGCAAATTTCACATTTGTCGCTCGTGATGCAAAGACAGGAAAATCAGCTCTTG TTAACCAGATCTCACCTGAAACTGATAAAGAGAAATTGCTTTGGGAAGAAGCAGAAGAAAGAAACAAGATGAGGAAAAAGAAGAAAGCGGAAAAGAAAAG GGATTCTGAGAATGAGGATATGGAAAGGCTCAATGCATTGTTGTCTGAAGGGAGGGTTTTCATTGACATGCCAGCATTGGCAGACAGAGATAGCATTCTT ATACAAGATACTCGTCATGAGAACACTTTTATTTGTCAGCCACAGCAAAGGAACATTCATGGTCGTATTTTTGGAGGGTTTTTGATGCGCAAGGCATTTG AACTGGCCTTCTCGAATGCTTATGCATTTGCTGGTGCAGCACCACTCTTTGTTGAAGTTGATCATGTTGATTTCTTCAGACCTGTGGATGTTGGAAATTT CCTTCGCTTGAAGTCTTGCATTTTGTACACAGAAGTCGAGAACCCAGCTGAACCTCTGATTAACGTGGAAGTTGTTGCTCATGTTACAAGGCCTGAGCTA AGGTCTAGCGAGGTATCAAACAAATTCTGCTTTACATTCACTGTCCTTCATGAGGCCATTAAAGATGGATTGAGGATTCGGAATGTTGTTCCAGCTACGG AAGAAGAAGCACGTCGAGTTCTTGAACGCATGGATTCTGAAAACTCCCAGATTGCAAAATCGTGA
AA sequence Show only first row Show all	>Potri.017G009800.1 pacid=42813770 polypeptide=Potri.017G009800.1.p locus=Potri.017G009800 ID=Potri.017G009800.1.v4.1 annot-version=v4.1 MRPLRKSLLEPNPKSSSLHKALSSQFTYSLDRPPAPKPHFNETTNTHFPFSRNQQKHHSNNGQTNTLLFNSLHKLKPTSSTLLSSQTRLFSCSSSFFSLS RSHFGKEPVFKVIFHDPISSKFIQRRAFSSENPNPENAVSGENSQPIDAGSSMRKPISLWPGMYHSPVSNALWEARSRIFEEPNDSGTSETELVAKSPSK SRTSICYKFSSDFILREQYRNPWNKIRMGKLVEDLDALAGTISYKHCCNDDGSTRPLLLVTASVDRIVLKKPILVDADLTIVGAVTWVGRSSMEIQMEVI QPTEGATNPSDAVALVANFTFVARDAKTGKSALVNQISPETDKEKLLWEEAEERNKMRKKKKAEKKRDSENEDMERLNALLSEGRVFIDMPALADRDSIL IQDTRHENTFICQPQQRNIHGRIFGGFLMRKAFELAFSNAYAFAGAAPLFVEVDHVDFFRPVDVGNFLRLKSCILYTEVENPAEPLINVEVVAHVTRPEL RSSEVSNKFCFTFTVLHEAIKDGLRIRNVVPATEEEARRVLERMDSENSQIAKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30720			Thioesterase/thiol ester dehyd...		Potri.017G009800 [exp]	0	1
AT5G05390		LAC12	laccase 12 (.1)		Potri.008G073800 [exp]	6.70	0.6806	LAC90b
AT2G22830		SQE2	squalene epoxidase 2 (.1)		Potri.015G121201 [exp]	17.29	0.5808
AT2G24370			Protein kinase protein with ad...		Potri.011G008356 [exp]	18.73	0.6557
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Potri.015G117350 [exp]	35.21	0.6228
AT4G04470		PMP22	Peroxisomal membrane 22 kDa (M...		Potri.004G008700 [exp]	39.29	0.5924
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.001G437950 [exp]	42.24	0.6094
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.018G038300 [exp]	52.76	0.5835
AT4G08330			unknown protein		Potri.005G178000 [exp]	54.77	0.5858
AT5G52300		LTI65, RD29B	RESPONSIVE TO DESSICATION 29B,...		Potri.015G143950 [exp]	61.98	0.5701
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Potri.013G110450 [exp]	64.96	0.5635

Compare expression of checked genes

Potri.017G009800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.