Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25500 630 / 0 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT2G43800 566 / 0 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G67470 500 / 9e-163 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT3G05470 385 / 6e-119 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G54650 382 / 8e-118 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT5G48360 356 / 2e-109 Actin-binding FH2 (formin homology 2) family protein (.1) AT4G15200 345 / 2e-105 AFH3 formin 3 (.1.2) AT3G07540 322 / 6e-96 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G70140 296 / 4e-87 ATFH8 formin 8 (.1) AT1G59910 293 / 1e-84 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G140200 [exp] 1214 / 0 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.014G174700 [exp] 659 / 0 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.002G240232 [exp] 650 / 0 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.007G054900 [exp] 546 / 3e-180 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.013G017900 [exp] 417 / 1e-130 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.005G026300 [exp] 406 / 3e-126 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.011G131700 [exp] 397 / 1e-122 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.001G416100 [exp] 394 / 9e-122 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G119900 [exp] 364 / 3e-111 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002149 [exp] 645 / 0 AT3G25500 717 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Lus10008739 [exp] 642 / 0 AT5G67470 711 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10025195 [exp] 522 / 5e-171 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10019298 [exp] 515 / 2e-167 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011524 [exp] 513 / 1e-166 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10004505 [exp] 409 / 1e-128 AT3G05470 628 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10031496 [exp] 395 / 1e-123 AT3G05470 608 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10029897 [exp] 390 / 8e-122 AT3G05470 618 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10015175 [exp] 389 / 3e-121 AT3G05470 635 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10011168 [exp] 382 / 8e-118 AT5G54650 640 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [poplar] [flax] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Potri.017G009900.1 pacid=42813704 polypeptide=Potri.017G009900.1.p locus=Potri.017G009900 ID=Potri.017G009900.1.v4.1 annot-version=v4.1 ATGTTTAATTACCTTCAAAAACATACATTGATGGCCACTACTACTAGTGCTAGTGTTACAGTAAATATTATCCTCCTCCACCTCCTCCTCCATCTTCACT TCACTACCACAACCTCCACCACTCACCACCGACACCTCCTCCACCAACCCTTTATCCCATTAACCCCCTCCATTACACCAACACAGCCTCCCTCCTCGTC TCCTCAACCCCAACCCAAATATCCTTTCACCGCCACCCCCAGCAACAACAACAACAGCAACCACAGTAACCCACAAAAGCCCTTCTTCCCTACCCTCCCT TCACCTCCACCACCTCCTCCTTCCGCTCCCACCCTATCAACTTTCCCTGCTAACATCTCCTCCCTCCTTCTCCCCCACCAATCCTCCTCTCCTCACCACA ACCTCATTATTGCAATTTCCATCTCCCTCTCCCTCCTTTTTGCTGCCCTCTTAGCCTTATTTTCAGCCTTCTTCATCTATTCTCGCAGAAAAACCCAGCC TTTTAGCCCTCAAAAGGGTTCAAGATCAGAAAATCTCCGCCTTTATCCTCAGAACACTATCCCTTCAGATGGTTCTCCTAAACCTCCGAAGCTCCCACAC CGTCCTGGTGTTGTAAGCACAAGCTCAGAGTTCCTTTACTTGGGCACATTAGTGAACTCTCGAGCTGGCATTGATGATCCAGACAAGCTAACTTCATCCA ACAATACTGGTCTTAAGATTGGTGTTTCCTCGTCATCTTCTTCACAGTATCAAAAACTTGGGTCTCCTGAGCTGAGACCGTTGCCTCCATTGCCTAGACA TAATTACACACCAACTTATAGAAGTGGTGAAGTTCTTGTTAGTTCTAGTAAAGAAGAAGATGAAGTTGATAGAGATACTGACGAGGAAGAAGAGTTCTTT TCACCAAGAGGGTCTTCTGGAAGGAAAGAGACTAGTCATGAGAGTCCAGTTCGTGTTGATTCAAGTTCTAGAAGAGAGATTCAAGGAGAGGTTTTTGGGT CTAGAAGTTTTAATTCAAGGACTGCTTCATATCCAGAATCAAACTTTTGTTCTCCATCAAAATCTGTGTCCAGCAGTGTGTCTCCAGTATCGAATTCTAG CCTTAGAAGCGGAGAATCTAAGTCTCCTGAAACTATAATCAGTTTTCCTGCTCCGGTTCAGTCCATTAAGCGATCCTCGCCACCCATTTCTTCATCATCA TCAGGGAGAGATTCAGGGGAGATGCAGAGTTCTTTGGAGCGAAATCTGGATTTTTCGGGACAGAATGAGCAGGTTCCAGTGAGGATAGAGAGTGCTAGTA AACAATTTGTGCCAGTAAAACTGCCACCACCGCCTCCACCACCTCCACCACCACGGTTTTGGGAGATGCCAATGGGGGTTAGAGTGACTCGGGAAATGAA TTTGGGGAGTTCAGGGCCTCCAGTTCTCGTTACGCCTACAAGGTCTGTTTTAGTTCAAAATCATGCAATGCCAGTTTTTGCCAATGAGCAAATGCAAAGC AAAGGTAGTGTTGAGAGGAATGAGGAGAGTATGAAACCAAAGTTGAAGCCTTTACATTGGGATAAAGTTAGAGCAAGCTCGGATCGGGCTATGGTGTGGG ATCAGATAAAATCTAGCTCTTTTCAGTTGAATGAGGAAATGATTGAGACACTTTTTACGGTGAATAATTCAAATTTTAACGTGAAGGATCACAATGGAAG GCGGCTATCTCTTCCATTGCTGAACCAGGAGAATACAGTACTTGATCCAAAGAAGTCCCAGAATATTGCAATATTGTTGAGGGCTCTTAATGTGACCATT GAAGAAGTCTGTGAAGCCCTTTTGGAAGGCAATTCAGATACTCTGGGAACAGAACTTCTTGAAAGTCTATCAAAGATGGCTCCGACTAAAGAAGAAGAAT GCAAACTAAAAGACTTCAAGGATGAATCACCGTTCAAGCTAGGCCCTGCTGAGAAATTTCTCAAGGAAGTGCTTGATGTTCCTTTTGCATTCAAGAGGGT TGATGCAATGCTTTATATTGCGAGTTTTGATTCAGAAATTGAGTACCTGCGAAGGTCTTTTGAAACACTGGAGGCAGCTTGTGAGGAATTGAAGAACAGC AGAATGTTCTTGAAACTTCTAGAAGCAGTGCTCAAGACTGGGAACCGCATGAATGTTGGCACCAATCGCGGCGATGCCCAAGCCTTCAAGCTTGACACAC TCCTGAAGCTTGTTGATATTAAAGGCACTGATGGGAAAACCACACTCTTGCATTTTGTTGTTCAGGAAATCATCAGGTCTGAAGGTTCTCGTCTTTGTGG TACAAACCAGGATCAAACAGCTCAGAAAACTCAACAATCAGCATTCCAAGATGAAGTTCAGTTTAGGAAGCTTGGTTTGCAAGTGGTTTCAGGTTTGAGT GGAGAGCTTACCAATGTAAAGAAATCCGCTGCAATGGATTCAGATGTGCTTTGCAGTGAAGTTGCAAAACTTGCCGCTGGAATGACAAAAATTACAGAAG TTCTGAAACTAAATGAAGAAATTGTGTTGAAGGAGAGTAGCTGGAAGTTCTCAGAGTCCATGAATGGGTTCATGAAGAAGGCAGAGGAAGAAATTGTAAG GCTTCAAGCACAGGAAAAGGCTGCTCTCTCTCTGGTGAAGGAAATAACTGAGTATTTCCATGGGAACTCGGCTAAGGTAGAAGCTCGCCCATTCTGGATT TTTATGGTGGTGAGGGATTTTATTTCCATTCTCGATCATGTATGCAAAGAGGTTGGAAAGATCAATGAAAGAACCATATACAGTTCAGTCCGTCCCATGC CTTTAAATCCAACACTTGCACCAGTTTTTCCAGGACTTGTTGGAAGGCTTCACGATGGTTCTTCTGACGATGAAACTCCATCATCTTGA
AA sequence Show only first row Show all	>Potri.017G009900.1 pacid=42813704 polypeptide=Potri.017G009900.1.p locus=Potri.017G009900 ID=Potri.017G009900.1.v4.1 annot-version=v4.1 MFNYLQKHTLMATTTSASVTVNIILLHLLLHLHFTTTTSTTHHRHLLHQPFIPLTPSITPTQPPSSSPQPQPKYPFTATPSNNNNSNHSNPQKPFFPTLP SPPPPPPSAPTLSTFPANISSLLLPHQSSSPHHNLIIAISISLSLLFAALLALFSAFFIYSRRKTQPFSPQKGSRSENLRLYPQNTIPSDGSPKPPKLPH RPGVVSTSSEFLYLGTLVNSRAGIDDPDKLTSSNNTGLKIGVSSSSSSQYQKLGSPELRPLPPLPRHNYTPTYRSGEVLVSSSKEEDEVDRDTDEEEEFF SPRGSSGRKETSHESPVRVDSSSRREIQGEVFGSRSFNSRTASYPESNFCSPSKSVSSSVSPVSNSSLRSGESKSPETIISFPAPVQSIKRSSPPISSSS SGRDSGEMQSSLERNLDFSGQNEQVPVRIESASKQFVPVKLPPPPPPPPPPRFWEMPMGVRVTREMNLGSSGPPVLVTPTRSVLVQNHAMPVFANEQMQS KGSVERNEESMKPKLKPLHWDKVRASSDRAMVWDQIKSSSFQLNEEMIETLFTVNNSNFNVKDHNGRRLSLPLLNQENTVLDPKKSQNIAILLRALNVTI EEVCEALLEGNSDTLGTELLESLSKMAPTKEEECKLKDFKDESPFKLGPAEKFLKEVLDVPFAFKRVDAMLYIASFDSEIEYLRRSFETLEAACEELKNS RMFLKLLEAVLKTGNRMNVGTNRGDAQAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRSEGSRLCGTNQDQTAQKTQQSAFQDEVQFRKLGLQVVSGLS GELTNVKKSAAMDSDVLCSEVAKLAAGMTKITEVLKLNEEIVLKESSWKFSESMNGFMKKAEEEIVRLQAQEKAALSLVKEITEYFHGNSAKVEARPFWI FMVVRDFISILDHVCKEVGKINERTIYSSVRPMPLNPTLAPVFPGLVGRLHDGSSDDETPSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.017G009900 [exp]	0	1
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Potri.003G079700 [exp]	1.73	0.7975
AT3G51670			SEC14 cytosolic factor family ...		Potri.016G127700 [exp]	2.23	0.7682
AT1G01300			Eukaryotic aspartyl protease f...		Potri.014G099400 [exp]	3.46	0.7620
AT3G13000			Protein of unknown function, D...		Potri.007G003900 [exp]	4.89	0.7955
AT1G80170			Pectin lyase-like superfamily ...		Potri.001G171900 [exp]	8.36	0.7541
AT1G11820			O-Glycosyl hydrolases family 1...		Potri.011G006100 [exp]	11.66	0.7709
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Potri.003G126500 [exp]	11.95	0.7326
AT2G22900			Galactosyl transferase GMA12/M...		Potri.007G005900 [exp]	13.85	0.7443	Pt-GT6.1
AT3G44850			Protein kinase superfamily pro...		Potri.004G190400 [exp]	14.49	0.6471
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.014G100100 [exp]	15.49	0.7100

Compare expression of checked genes

Potri.017G009900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.