Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 264 / 4e-84 HXXXD-type acyl-transferase family protein (.1) AT4G15390 231 / 6e-71 HXXXD-type acyl-transferase family protein (.1) AT1G24430 226 / 2e-69 HXXXD-type acyl-transferase family protein (.1) AT3G30280 226 / 2e-69 HXXXD-type acyl-transferase family protein (.1) AT5G23970 218 / 2e-66 HXXXD-type acyl-transferase family protein (.1) AT5G47950 204 / 5e-61 HXXXD-type acyl-transferase family protein (.1) AT5G47980 194 / 3e-57 HXXXD-type acyl-transferase family protein (.1) AT1G24420 193 / 1e-56 HXXXD-type acyl-transferase family protein (.1) AT4G15400 165 / 3e-46 HXXXD-type acyl-transferase family protein (.1) AT5G48930 120 / 4e-30 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G139400 [exp] 509 / 1e-180 AT3G26040 252 / 7e-80 HXXXD-type acyl-transferase family protein (.1) Potri.006G010300 [exp] 453 / 5e-158 AT3G26040 294 / 2e-95 HXXXD-type acyl-transferase family protein (.1) Potri.006G010200 [exp] 402 / 1e-138 AT3G26040 247 / 9e-78 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 285 / 4e-92 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.010G056300 [exp] 283 / 3e-91 AT3G26040 347 / 4e-116 HXXXD-type acyl-transferase family protein (.1) Potri.010G056450 [exp] 275 / 2e-88 AT3G26040 350 / 3e-117 HXXXD-type acyl-transferase family protein (.1) Potri.010G056400 [exp] 274 / 6e-88 AT3G26040 354 / 5e-119 HXXXD-type acyl-transferase family protein (.1) Potri.008G180400 [exp] 266 / 9e-85 AT3G26040 383 / 4e-130 HXXXD-type acyl-transferase family protein (.1) Potri.010G054100 [exp] 264 / 6e-84 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017925 [exp] 277 / 1e-88 AT3G26040 264 / 1e-83 HXXXD-type acyl-transferase family protein (.1) Lus10035932 [exp] 267 / 8e-85 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 254 / 8e-80 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 239 / 2e-74 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10036929 [exp] 217 / 6e-64 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10039330 [exp] 210 / 5e-63 AT3G26040 240 / 2e-74 HXXXD-type acyl-transferase family protein (.1) Lus10042433 [exp] 202 / 7e-60 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1) Lus10036819 [exp] 192 / 2e-56 AT3G26040 256 / 1e-80 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 192 / 2e-56 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 190 / 2e-55 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.017G010600.1 pacid=42813485 polypeptide=Potri.017G010600.1.p locus=Potri.017G010600 ID=Potri.017G010600.1.v4.1 annot-version=v4.1 ATGGAAATTCAAATTATTTCTAAGGAAATCATCAAGCCCTCTGCTCCAACACCTCACCACCTAAAAACCTATAAGCTCTCAGCTGTCGACCAGCTTGCTG CTTTTTCAGCGGATGTCCCTATCATTCTCTTTTATTCCCCAACAGATGAAATTTCCAGCAAAAACTCTGATTATCTAAAGAAATCCTTCGCTAAAACGCT AACACTCTTCTACCCTTTTGCTGGACGAATAAAAGATGATTCATCCATTGATTGCAATGATGATGGAGCCACTTATATTGAAGCCCATGTAGCAGGCAAC ATGTCCATGATACTTCAACAGCCAGACATGGATCAATTGGAACAGCTACAGTCATGCAAGCCGGACGAAAACGTTGATGAGCCAAGCGGCAAGGTAATGC TAGCAGCCCAAGTGAATTATTTTGATTGTGGTGGGATAGCAATCAGTGTTCGCATTCGCCATCGAATAGGTGATGCATCCTCACTGGCAAGTTTTGTTAA ATGCTGGGGTGCAATTTCTTGTGGTATTTATGATAATAATGCAGGAACGGTTGTTGATTGCTCCTCAGTCTTCCCTCCGCAAGATTTGTCAGGCATGTCA TTCTTATACAATCTTATACCTCGTAGTTCATTCAATATATCCACGAAAAGATTCGTGTTTGAGGGTCCTAAGCTAGCAGCGCTAAGAGGAAAGTTGTGCA ACGGGCCATATTTGAATCGTCCAACCCGGTTCGAGGCTGTATCTGCCCTTATTTGGGGTGTTGTTGGAGAAGATAGTGAGTCTAAAAAGGTAAATAGACC CGCAACAATTGCCGTGGATTTGCGGAAAAGAATGGATCCACCCCTACCACAACATTGTATTGGAAATATGGTCCATTTGGCTGAGGCAAATTGGGAAAAT AAAGCAGTGGACTGTAATGGTTTAGCTGGAAAAATTCATGAGTCAATAAGCATGATAAACAGTGACTATGTGAGGCAGGTATACGCAGACGGCACCTTCT TCAGTTTAATGAGACAAAGAATGGCGGAGATGGCAGAAGATCCTAATAGCTTTAGGGGTGTAATTGGTTTCAGTAGTTGGTGTAAATTTCGATTTTATGA GGTTGATTTTGGATGGGGAAAGCCCATTTGGGTAGGCACTTCTTTGAGGCTTGAACCCAACTGGGTCATGCTATTGGATACAAGGGATGGTGAGGGAATG GAAGTAAGGATTGCATTACCCAACGAAGAAATGGTCAAGTTCGAACAAAATCCAGACATCTTAGCCTATGCTTCTTTCACTCCAGCCATATGA
AA sequence Show only first row Show all	>Potri.017G010600.1 pacid=42813485 polypeptide=Potri.017G010600.1.p locus=Potri.017G010600 ID=Potri.017G010600.1.v4.1 annot-version=v4.1 MEIQIISKEIIKPSAPTPHHLKTYKLSAVDQLAAFSADVPIILFYSPTDEISSKNSDYLKKSFAKTLTLFYPFAGRIKDDSSIDCNDDGATYIEAHVAGN MSMILQQPDMDQLEQLQSCKPDENVDEPSGKVMLAAQVNYFDCGGIAISVRIRHRIGDASSLASFVKCWGAISCGIYDNNAGTVVDCSSVFPPQDLSGMS FLYNLIPRSSFNISTKRFVFEGPKLAALRGKLCNGPYLNRPTRFEAVSALIWGVVGEDSESKKVNRPATIAVDLRKRMDPPLPQHCIGNMVHLAEANWEN KAVDCNGLAGKIHESISMINSDYVRQVYADGTFFSLMRQRMAEMAEDPNSFRGVIGFSSWCKFRFYEVDFGWGKPIWVGTSLRLEPNWVMLLDTRDGEGM EVRIALPNEEMVKFEQNPDILAYASFTPAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.017G010600 [exp]	0	1
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Potri.018G115400 [exp]	18.89	0.8976	Pt-RPS11.3
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Potri.005G162100 [exp]	19.49	0.8968	COX6.2
AT3G14060			unknown protein		Potri.003G067200 [exp]	21.35	0.8323
AT5G27990			Pre-rRNA-processing protein TS...		Potri.005G047901 [exp]	23.36	0.8870
AT1G53708		RTFL9	ROTUNDIFOLIA like 9 (.1)		Potri.002G235101 [exp]	23.49	0.8064
AT5G28060			Ribosomal protein S24e family ...		Potri.008G152500 [exp]	28.01	0.8926
AT5G60980			Nuclear transport factor 2 (NT...		Potri.015G058700 [exp]	30.59	0.8719
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Potri.002G257200 [exp]	36.66	0.8801	TOM22.1
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Potri.006G249500 [exp]	43.05	0.8020
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Potri.001G322300 [exp]	43.43	0.8647	PtrPht3-2

Compare expression of checked genes

Potri.017G010600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.