Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16460 135 / 5e-34 JAL34 jacalin-related lectin 34, Mannose-binding lectin superfamily protein (.1.2) AT1G57570 112 / 1e-26 Mannose-binding lectin superfamily protein (.1) AT1G52040 111 / 2e-26 ATMBP, MBP1 myrosinase-binding protein 1 (.1) AT5G35940 110 / 4e-26 Mannose-binding lectin superfamily protein (.1) AT5G49870 108 / 4e-25 Mannose-binding lectin superfamily protein (.1) AT2G39310 107 / 5e-25 JAL22 jacalin-related lectin 22 (.1.2.3) AT1G52100 106 / 8e-25 Mannose-binding lectin superfamily protein (.1.2) AT2G25980 103 / 5e-24 Mannose-binding lectin superfamily protein (.1) AT2G39330 103 / 6e-24 JAL23 jacalin-related lectin 23 (.1) AT1G33790 101 / 1e-22 jacalin lectin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G232500 [exp] 195 / 2e-56 AT1G19715 486 / 2e-166 Mannose-binding lectin superfamily protein (.1.2.3) Potri.002G030400 [exp] 138 / 3e-35 AT1G19715 590 / 0.0 Mannose-binding lectin superfamily protein (.1.2.3) Potri.005G232400 [exp] 118 / 2e-28 AT1G19715 609 / 0.0 Mannose-binding lectin superfamily protein (.1.2.3) Potri.012G140001 [exp] 91 / 3e-21 AT1G73040 214 / 1e-71 Mannose-binding lectin superfamily protein (.1) Potri.010G144900 [exp] 46 / 1e-05 AT1G05760 92 / 5e-24 restricted tev movement 1, Mannose-binding lectin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024290 [exp] 107 / 1e-24 AT1G19715 607 / 0.0 Mannose-binding lectin superfamily protein (.1.2.3) Lus10024291 [exp] 103 / 2e-23 AT1G19715 438 / 1e-146 Mannose-binding lectin superfamily protein (.1.2.3) Lus10006866 [exp] 90 / 6e-19 AT1G73040 194 / 5e-58 Mannose-binding lectin superfamily protein (.1) Lus10037605 [exp] 87 / 2e-18 AT1G73040 198 / 1e-62 Mannose-binding lectin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0568 [poplar] [flax] Man_lectin PF01419 [poplar] [flax] Jacalin Jacalin-like lectin domain
Representative CDS sequence Show only first row Show all	>Potri.017G010900.2 pacid=42814365 polypeptide=Potri.017G010900.2.p locus=Potri.017G010900 ID=Potri.017G010900.2.v4.1 annot-version=v4.1 ATGGCATCCTTGGAACGAATCATTTCATTGGGACCATGGGGAGGTTTAGGTGGAGACCACTGGAGTTACAGGGCAAGCGGTGGGATAACTGAGATAGTCC TCCGTGTAGAAGGAAATATCAAGTCCATTTCCTTCAAAGATGCCAGTGGCCTGGTTTCTGGGACATTCGGTGGCAGGGGCAACGACCCTAATGACAGGGG TGAACAGAAAAAGATTGAGATCCAATGGCCTTCAGAGTATTTGAAATCTATAAGCGGAACTTATGGAAGCTACAAAGGACTATTAGTGATCACTTCCCTA TCGTTCATTACAAATCTCACTACATATGGACCTTTTGGAACAGCTCCTGGTGAAACTTTCTCTATCCCGATAGCAGATAGCGCCGTGGTTGGCTTCCATG GGAGATGTGGTTACTACCTTGATGCACTTGGTATTTTTGTGACACCGGCAAATTCACATGGAAGCATTTCAGTTGGGCAATGGGGTGGTCCAGGTGGAGA TCCTTTTAGTTTTAGGGTGGGAAGCTGGATAAAAGAGATAATTGTTCATGAAGGAACCAATATCAAGTCCCTCTCTTTCAAAGACGGCAATGACCAAGAG TACGGAAAATTTGGCGGCAATAATGCTAATGACACTGGTGAAGAAAGAAGAATCGAGATCGACGGGCTTTCAGAGCATCTAACATCCATAACTGGGACAT ATGGAAATTATGCTGGAATTGTGGTGATCACATCACTATCATTCATAACTAATCTCACTACACATGGACCTTTCGGAACTGCTACCGGCACTTCTTTCTC CGTACCAATTGAAGGTTCTGTCGTGATTGGATTTCATGGAAGAGGCGGCCACTACCTTGATGCAATTGGCATCCATGTGAAACCTAGGGACATAGAAGGA ACTATCTCAATAGGTCCATGGGGAGGCCAAGGTGGGAATCCATGGAGTTACATGACAAATCAAGGTATAAACCAGATAGTCATCAATGTAGGATCAAACA TTAAGTCTATATCTTTCCGGGACACAACTGACTTGGATTCTGCAACATTCGGAGGCAACAACCCCAATGACATTGGTGAAAGGAAAACTGTTCTTATTAA CTGGCCTTCTGAACACCTGATATCCATAAGTGGGACATATGGCAATTTCAGCACTTTATTAACGATCACATCGCTGTCATTCACTACAAATAGGGCTACT TATGGACCTTTTGGAACCGGTTCTGGCACTCCTTTCTCCATCCCGATAAATAATAATACGGTGGTTGGATTCCACGGAAGAGCTGGACACTACCTCGACG CCATTGGCATCTTTGTCAAACCAGAGACGACAATCTAA
AA sequence Show only first row Show all	>Potri.017G010900.2 pacid=42814365 polypeptide=Potri.017G010900.2.p locus=Potri.017G010900 ID=Potri.017G010900.2.v4.1 annot-version=v4.1 MASLERIISLGPWGGLGGDHWSYRASGGITEIVLRVEGNIKSISFKDASGLVSGTFGGRGNDPNDRGEQKKIEIQWPSEYLKSISGTYGSYKGLLVITSL SFITNLTTYGPFGTAPGETFSIPIADSAVVGFHGRCGYYLDALGIFVTPANSHGSISVGQWGGPGGDPFSFRVGSWIKEIIVHEGTNIKSLSFKDGNDQE YGKFGGNNANDTGEERRIEIDGLSEHLTSITGTYGNYAGIVVITSLSFITNLTTHGPFGTATGTSFSVPIEGSVVIGFHGRGGHYLDAIGIHVKPRDIEG TISIGPWGGQGGNPWSYMTNQGINQIVINVGSNIKSISFRDTTDLDSATFGGNNPNDIGERKTVLINWPSEHLISISGTYGNFSTLLTITSLSFTTNRAT YGPFGTGSGTPFSIPINNNTVVGFHGRAGHYLDAIGIFVKPETTI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16460		JAL34	jacalin-related lectin 34, Man...		Potri.017G010900 [exp]	0	1
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Potri.002G024200 [exp]	8.12	0.7125
AT5G50890			alpha/beta-Hydrolases superfam...		Potri.005G204100 [exp]	9.48	0.6823
AT5G03870			Glutaredoxin family protein (....		Potri.016G079400 [exp]	12.12	0.6474
					Potri.008G127651 [exp]	14.14	0.6124
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Potri.005G070300 [exp]	16.12	0.7281
AT5G67090			Subtilisin-like serine endopep...		Potri.002G124500 [exp]	20.63	0.7757
AT1G21340	DOF	AtDof1,2	Dof-type zinc finger DNA-bindi...		Potri.002G070700 [exp]	35.00	0.7259
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Potri.001G140000 [exp]	42.04	0.5994
AT1G12640			MBOAT (membrane bound O-acyl t...		Potri.003G121700 [exp]	50.19	0.6318
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Potri.003G195700 [exp]	59.14	0.6243	Pt-NQR.3

Compare expression of checked genes

Potri.017G010900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.