Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 86 / 3e-18 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT1G12170 77 / 2e-15 F-box family protein (.1) AT4G22390 76 / 8e-15 F-box associated ubiquitination effector family protein (.1) AT3G07870 75 / 1e-14 F-box and associated interaction domains-containing protein (.1) AT1G11620 74 / 3e-14 F-box and associated interaction domains-containing protein (.1) AT2G02030 73 / 4e-14 F-box family protein (.1) AT3G06240 73 / 7e-14 F-box family protein (.1) AT4G09190 71 / 2e-13 F-box and associated interaction domains-containing protein (.1) AT3G17280 69 / 8e-13 F-box and associated interaction domains-containing protein (.1) AT1G13200 69 / 2e-12 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G114900 [exp] 337 / 6e-113 AT3G21410 73 / 9e-14 F-box and associated interaction domains-containing protein (.1) Potri.006G170300 [exp] 311 / 7e-103 AT4G12560 69 / 1e-12 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G099733 [exp] 284 / 2e-93 AT3G16210 92 / 2e-20 F-box family protein (.1) Potri.001G318400 [exp] 102 / 4e-24 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.001G035500 [exp] 99 / 1e-22 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G199800 [exp] 99 / 2e-22 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.010G207500 [exp] 96 / 1e-21 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.014G162600 [exp] 94 / 5e-21 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.002G223000 [exp] 94 / 6e-21 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013872 [exp] 99 / 1e-22 AT3G06240 101 / 2e-23 F-box family protein (.1) Lus10031020 [exp] 95 / 3e-21 AT3G10430 88 / 3e-19 F-box and associated interaction domains-containing protein (.1) Lus10001105 [exp] 95 / 3e-21 AT3G06240 109 / 3e-26 F-box family protein (.1) Lus10037892 [exp] 93 / 9e-21 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10023372 [exp] 92 / 5e-20 AT3G16210 67 / 5e-12 F-box family protein (.1) Lus10029527 [exp] 89 / 5e-19 AT3G07870 70 / 6e-13 F-box and associated interaction domains-containing protein (.1) Lus10007847 [exp] 87 / 7e-19 AT3G10430 76 / 7e-15 F-box and associated interaction domains-containing protein (.1) Lus10008871 [exp] 87 / 2e-18 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10038606 [exp] 86 / 3e-18 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10008870 [exp] 86 / 4e-18 AT3G23880 126 / 9e-33 F-box and associated interaction domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0162 [poplar] [flax] FBA PF07734 [poplar] [flax] FBA_1 F-box associated
Representative CDS sequence Show only first row Show all	>Potri.017G012200.3 pacid=42813566 polypeptide=Potri.017G012200.3.p locus=Potri.017G012200 ID=Potri.017G012200.3.v4.1 annot-version=v4.1 ATGTTGAAAGGAAAGGCAATCAAGATCGAAGATCCATTACCTGAAGATTTGATAACTGAGATTCTATCATGGCTGCCGGTGAAAGCTCTACTGCAATTCA AGTGCGTTTGCAAGTCATGGTATGCGATCATTACAAGCCAAGCTTTCATATCCAAGCATCTTAATAATTACTATGACAACTATAACGATATTGATACTTT CCTTGCTCAGTATTTCGTAACGAAATTAGGAGAACTTGCGTTGTATGAATTCTTGGTAGATGAAACATCTACAATTTTATCATACGAAGAACTGCGTGAT AGGCCCATATATAATTCCTTTATCTGTGGTCCTTGCAATGGGATATTCTACCTGGACCGTTATTCTTATAGGGATCATCGTGCTCTATGGAACCCTGCAA CCAATGAACTGAAAACATTACCTCCACTAATAAGGAAACCCAATCTCCCATCCCTTAGCTTTTATGCTGGTGTCAAGGAAGTTTTTGGTTTTGGATTTGA TAGAGTAACTAAAGATTACAAGGTGATTGTTATTAAAAGTTGGAGCAAAACAAATAGCAAAATTCGTTATCCTTTATCAGTCTTTGTGTACTCATTAAGT ACTGATTCTTGGAGATATTGGGGAGATTTGCCACAAAATTACAAGTTATTGAGCAACAATAAATGTTACATTTGTTTGAATGGAGTTTTTTACTGGTTGG GATCAGATTATTCTGGTGGGAAAACTTATGACGAAGCCATTATTTCTTTTGATATGGCTACTGATTTGATCCAAGATATGCAGCTACCAGACTATGACAA GCCAGCCAGGGAAACTGTTCTTTCAGTATACCATGACTCCCTTGCTTTGCTTACTGTTCATGATATCAAGCATTTTCTTGAGATATGGACATTGAAGGAG GGATGTTGGACAAAACAATTCACTGTTGGGACTAGTTCATATGGACGGATTTCACCAATTGCGCATTGGAAGAATAGTAAGTTTATCTTTGAATGTGGCC CTTGTAAGGAACTAACCTTATTTGACATTATTACCCAAGAAATAACCTATCTTGGATATATAAAAGATATTCATTCGTGCGAAGGAATTTTCGTTTATCG GGGGAGCCTGGTCTCATTCAAGGATAGAAATGAACACTGGGAAGCTGAAGCGCTAGCACAATAG
AA sequence Show only first row Show all	>Potri.017G012200.3 pacid=42813566 polypeptide=Potri.017G012200.3.p locus=Potri.017G012200 ID=Potri.017G012200.3.v4.1 annot-version=v4.1 MLKGKAIKIEDPLPEDLITEILSWLPVKALLQFKCVCKSWYAIITSQAFISKHLNNYYDNYNDIDTFLAQYFVTKLGELALYEFLVDETSTILSYEELRD RPIYNSFICGPCNGIFYLDRYSYRDHRALWNPATNELKTLPPLIRKPNLPSLSFYAGVKEVFGFGFDRVTKDYKVIVIKSWSKTNSKIRYPLSVFVYSLS TDSWRYWGDLPQNYKLLSNNKCYICLNGVFYWLGSDYSGGKTYDEAIISFDMATDLIQDMQLPDYDKPARETVLSVYHDSLALLTVHDIKHFLEIWTLKE GCWTKQFTVGTSSYGRISPIAHWKNSKFIFECGPCKELTLFDIITQEITYLGYIKDIHSCEGIFVYRGSLVSFKDRNEHWEAEALAQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.017G012200 [exp]	0	1
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Potri.001G156200 [exp]	9.59	0.8541
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Potri.003G111600 [exp]	9.89	0.8299
AT2G40820			unknown protein		Potri.016G033100 [exp]	13.34	0.8658
AT3G55640			Mitochondrial substrate carrie...		Potri.008G060900 [exp]	20.19	0.8219
AT5G12260			unknown protein		Potri.009G066900 [exp]	26.21	0.8505
AT5G61865			unknown protein		Potri.012G108900 [exp]	48.33	0.8288
AT5G12260			unknown protein		Potri.012G121826 [exp]	54.79	0.8234
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.001G214201 [exp]	75.04	0.8106
					Potri.011G134500 [exp]	85.06	0.7852
AT1G12370		UVR2, PHR1	UV RESISTANCE 2, photolyase 1 ...		Potri.001G116800 [exp]	89.64	0.7636	Pt-PHR1.2

Compare expression of checked genes

Potri.017G012200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.