Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CHR912
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03750 1162 / 0 SWI2, SNF2, CHR9 CHROMATIN REMODELING 9, switch 2 (.1) AT2G18760 280 / 3e-79 CHR8 chromatin remodeling 8 (.1) AT3G19210 267 / 4e-76 ATRAD54, CHR25 homolog of RAD54 (.1.2) AT5G63950 243 / 8e-67 CHR24 chromatin remodeling 24 (.1) AT3G54280 226 / 5e-61 RGD3, ATBTAF1, CHR16, CHA16 ROOT GROWTH DEFECTIVE 3, DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases (.1.2) AT4G31900 225 / 6e-61 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT5G44800 203 / 2e-53 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT2G02090 190 / 3e-50 CHA19, ETL1, CHR19 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT5G19310 149 / 2e-36 Homeotic gene regulator (.1) AT3G12810 146 / 2e-35 CHR13, SRCAP, PIE1 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G066600 [exp] 244 / 2e-67 AT2G18760 353 / 7e-104 chromatin remodeling 8 (.1) Potri.007G102800 [exp] 243 / 9e-67 AT5G63950 1103 / 0.0 chromatin remodeling 24 (.1) Potri.004G141500 [exp] 239 / 3e-66 AT3G19210 1259 / 0.0 homolog of RAD54 (.1.2) Potri.001G253400 [exp] 226 / 1e-60 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.019G021500 [exp] 218 / 3e-58 AT1G08600 1612 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.003G110100 [exp] 214 / 6e-57 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.001G123400 [exp] 214 / 6e-57 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.010G099000 [exp] 199 / 2e-53 AT2G02090 1061 / 0.0 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.002G160900 [exp] 202 / 3e-53 AT2G46020 2519 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033669 [exp] 1265 / 0 AT1G03750 1148 / 0.0 CHROMATIN REMODELING 9, switch 2 (.1) Lus10033909 [exp] 285 / 4e-81 AT2G18760 1569 / 0.0 chromatin remodeling 8 (.1) Lus10003543 [exp] 281 / 2e-79 AT2G18760 1543 / 0.0 chromatin remodeling 8 (.1) Lus10017712 [exp] 253 / 8e-79 AT1G03750 244 / 2e-76 CHROMATIN REMODELING 9, switch 2 (.1) Lus10015690 [exp] 252 / 8e-70 AT5G63950 1133 / 0.0 chromatin remodeling 24 (.1) Lus10037696 [exp] 249 / 5e-69 AT5G63950 1121 / 0.0 chromatin remodeling 24 (.1) Lus10014047 [exp] 246 / 2e-68 AT3G19210 1256 / 0.0 homolog of RAD54 (.1.2) Lus10019866 [exp] 245 / 3e-68 AT3G19210 1257 / 0.0 homolog of RAD54 (.1.2) Lus10024019 [exp] 229 / 3e-63 AT5G66750 1034 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10038363 [exp] 219 / 2e-58 AT5G44800 1916 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.017G012400.1 pacid=42813763 polypeptide=Potri.017G012400.1.p locus=Potri.017G012400 ID=Potri.017G012400.1.v4.1 annot-version=v4.1 ATGTCTCTTCTCACGAGTTTCAAGGCCTTGAAAGAAATCCTTAAACCCTGCTCAAATCTTTCAACAACAACATCATCATCATCCTCTTCTTCTTTAACAC AGCCATCATTCTCCCAAGAACCAGAACCAGCACTAACCATCTCAAGAAAGCCACCAAAATCCTCTCTTTCAAAGCAACTCCAACGTCTTGGAGAACCTTT TCGTCCTTTATCACAACAGAATGGCTCACTAAATGCAAGAACTCAACAACCCCAGAATTCACAAGGGCTTAGAAATGAAGCCCAAGTTGTAAAATCTGAA GATAGGCAGGAAGAAGAGGAGAAGGAGAGGGAGTTTGAGGATCTTGGGAGAACTAAATTGGGTCAGTTTCAGTTTGAACATACTGGACCCTTTGAGCCAC TAGTCCTTTCTTTGCTTGGAGAGGTTCCTGTCATACGGGTTCCTGCTTCTATTAACTGCAGGTTGCTTGAACATCAAAGGGAGGGAGTAAAATTTTTATA TAAGCTATACCTAGACAACCATGGAGGTGTTCTTGGTGATGACATGGGACTAGGCAAGACCATTCAGACAATTGCTTTCCTGGCTGCTATCTTTGAAAAA GATGAAGAATCCGGTGAGTCCATAACATTAAAGGGAAACCAAGTAGGTAAAAAAGGCCCTGTCCTTATAATTTGCCCCACTTCTGTTATCCACAATTGGG AAAGTGAATTCTCTAGATGGGCAAGCTTTAGTGTTTCTCTTTACCATGGGACAAACCGTGATTTGATACTTGAGAAACTGAAAGCTGGTGGAGTTGAGAT ACTGATTACCAGTTTTGACACGTACAGAATTCATGGCAGCATTTTGTCAGAGGTGGATTGGGAGGTTGTGATTGTTGATGAGGCGCATCGGCTTAAAAAT GAAAAGTCAAAATTATATCTAGCATGTTTAGAAATTAAAACGAGAAAACGTATTGGTCTCACAGGAACTGTTATGCAGAATAAAATTATTGAGCTGTTTA ATCTCCTTGATTGGGTTGCTCCCGGGTCTCTGGGATCAAGGGAACACTTTCGAGAGTTTTATGATGAACCTCTCAAGCATGGCCAAAGGTCAACTGCACC TGAAAGTTTTGTCCGGAAAGCTGATAAGCGCAAAGAGCACCTAGTGTCAGTTCTTTGTAAGTACATGCTTAGAAGGACAAAGGAGGAGACCATTGGACAT CTTATGATGGGAAAGGAAGACAATGTTGTGTTCTGTTCCATGAGTGAATTGCAAAGGCGGGTTTATAGGAGCATGTTGCAACTGCCAGACATCCAGTGCC TTGTAAATAAGGATCTTCCATGTAGTTGTGGCAGCCCTCTAAAACAGGTGGAATGCTGCAAAAGGATTGTGCCAGATGGAATTATATGGCCCTACCTTCA TAGGGATAACCCTGAAGGTTGTGATTCGTGCCCCTATTGCCTTGTTCTTCCTTGCCTTGTGAAACTCCAACAGATAAGCAATCACCTCGAGCTGATTAAG CCTAACCCTAGGGATGAACCGGATAAACAGAAGAAGGATGCAGAGTTTGCCTCTGCTGTCTTTGGTGCTGATGTAGATTTGGTGGGAGGAAATGCCCAAA GTGAAAATTTCATGGGCTTGAGCGATGTCAAACATTGTGGGAAAATGCAAGCATTAGAAAAGTTAATGTTTTCCTGGGCTTCACGAGGTGACAAAATTCT TCTCTTCAGCTATTCTGTCAGGATGCTGGACATACTGGAAAAATTTCTGATACGCAAAGGGCATAGCTTCTCGAGACTTGATGGTTCTACTCCAACTAAC TTGCGTCAATCTTTGGTTGATGACTTCAACTCTAGTCCAAGCAAACAGGTGTTCCTTATATCAACTCGAGCTGGTGGGCTTGGATTGAATCTTGTCAGCG CAAATCGCGTAGTTATATTTGATCCAAACTGGAATCCTGCCCAAGACTTGCAGGCCCAAGACAGGTCGTTTCGTTTTGGACAGAAGCGGCATGTTGTGGT TTTCCGCCTTCTTGCAGCTGGTTCTTTTGAGGAACTTGTTTATTCCCGTCAAGTGTACAAACAGCAGCTGTCAAATATTGCTGTTTCAGGGAAGATAGAA AACCGGTATTTTGAAGGCGTTCAGGATTGCAAAGAATTTCAGGGTGAGCTTTTTGGTATTTGCAATCTGTTCCGTGATCTATCTGATAAGCTTTTTACCA GTGAAATCATTGAACTACATGAGAAACAGGGAAAGGGTGATGGACAATGCTCTACTACAATGCAAGAGTTGCCTGAACTTGGGACCTGTTTCCTTCATCC TGACCAAGCAGCTGTAACAACTTCATCAGCATGCGAAACCAGTGACAATGGGAATCATGAGAGTGTTACAAGGAAGAAACCTGTTCTTGAAGAGTTAGGT ATTCTTTACACTCATCGGAACGAGGACATTGTCAATATTGGACCTGGAATTAGAAAGAACACAGAAGAAAGCATCCCTGGTAAAGATAGCATAAACAACC CTCCTGTTAAGCGGCGAAGGAAACCAGATGATGTAGGTGGGAAAAGGAATGATTTGCCATCCAAGGATTGGAAAAAGATCCAATATAGTCTCCTTGCTCA GTTCATGGGAATGGGGGAGGTTGAATTTAGCAAATGGGTTCTATCAGCAACCACTTCAGAGAGAGAAAATGCGCTTCGGGACTACAAGAAGAGGAAGGAG AAGATGCCTGATGGTTGA
AA sequence Show only first row Show all	>Potri.017G012400.1 pacid=42813763 polypeptide=Potri.017G012400.1.p locus=Potri.017G012400 ID=Potri.017G012400.1.v4.1 annot-version=v4.1 MSLLTSFKALKEILKPCSNLSTTTSSSSSSSLTQPSFSQEPEPALTISRKPPKSSLSKQLQRLGEPFRPLSQQNGSLNARTQQPQNSQGLRNEAQVVKSE DRQEEEEKEREFEDLGRTKLGQFQFEHTGPFEPLVLSLLGEVPVIRVPASINCRLLEHQREGVKFLYKLYLDNHGGVLGDDMGLGKTIQTIAFLAAIFEK DEESGESITLKGNQVGKKGPVLIICPTSVIHNWESEFSRWASFSVSLYHGTNRDLILEKLKAGGVEILITSFDTYRIHGSILSEVDWEVVIVDEAHRLKN EKSKLYLACLEIKTRKRIGLTGTVMQNKIIELFNLLDWVAPGSLGSREHFREFYDEPLKHGQRSTAPESFVRKADKRKEHLVSVLCKYMLRRTKEETIGH LMMGKEDNVVFCSMSELQRRVYRSMLQLPDIQCLVNKDLPCSCGSPLKQVECCKRIVPDGIIWPYLHRDNPEGCDSCPYCLVLPCLVKLQQISNHLELIK PNPRDEPDKQKKDAEFASAVFGADVDLVGGNAQSENFMGLSDVKHCGKMQALEKLMFSWASRGDKILLFSYSVRMLDILEKFLIRKGHSFSRLDGSTPTN LRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSFEELVYSRQVYKQQLSNIAVSGKIE NRYFEGVQDCKEFQGELFGICNLFRDLSDKLFTSEIIELHEKQGKGDGQCSTTMQELPELGTCFLHPDQAAVTTSSACETSDNGNHESVTRKKPVLEELG ILYTHRNEDIVNIGPGIRKNTEESIPGKDSINNPPVKRRRKPDDVGGKRNDLPSKDWKKIQYSLLAQFMGMGEVEFSKWVLSATTSERENALRDYKKRKE KMPDG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03750		SWI2, SNF2, CHR...	CHROMATIN REMODELING 9, switch...		Potri.017G012400 [exp]	0	1	CHR912
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Potri.006G153100 [exp]	4.24	0.8491
AT4G31430			unknown protein		Potri.006G275200 [exp]	7.48	0.8367
AT5G14770			Tetratricopeptide repeat (TPR)...		Potri.019G043101 [exp]	8.83	0.8525
AT1G09730			Cysteine proteinases superfami...		Potri.017G044000 [exp]	11.66	0.8460
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Potri.001G246100 [exp]	12.64	0.8438
AT1G09730			Cysteine proteinases superfami...		Potri.007G115400 [exp]	13.07	0.8283
AT1G45231			S-adenosyl-L-methionine-depend...		Potri.014G028000 [exp]	17.00	0.8093
AT5G55600			agenet domain-containing prote...		Potri.001G365800 [exp]	18.54	0.8355
AT1G44820			Peptidase M20/M25/M40 family p...		Potri.002G085500 [exp]	22.24	0.8203
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.001G004200 [exp]	22.71	0.8426

Compare expression of checked genes

Potri.017G012400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.