Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20650 893 / 0 RING/U-box superfamily protein (.1.2) AT4G28370 887 / 0 RING/U-box superfamily protein (.1) AT4G12190 47 / 9e-07 RING/U-box superfamily protein (.1) AT1G74620 49 / 3e-06 RING/U-box superfamily protein (.1) AT2G01150 48 / 3e-06 RHA2B RING-H2 finger protein 2B (.1) AT2G35420 49 / 4e-06 RING/U-box superfamily protein (.1) AT2G17450 47 / 5e-06 RHA3A RING-H2 finger A3A (.1) AT1G53010 47 / 6e-06 RING/U-box superfamily protein (.1) AT5G01880 45 / 2e-05 RING/U-box superfamily protein (.1) AT3G47180 46 / 3e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G139300 [exp] 1006 / 0 AT2G20650 867 / 0.0 RING/U-box superfamily protein (.1.2) Potri.001G400600 [exp] 58 / 7e-10 AT2G20650 59 / 8e-11 RING/U-box superfamily protein (.1.2) Potri.011G119900 [exp] 50 / 3e-07 AT1G14200 60 / 9e-12 RING/U-box superfamily protein (.1) Potri.007G107000 [exp] 50 / 9e-07 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.004G122000 [exp] 48 / 1e-06 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.007G118000 [exp] 49 / 2e-06 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.010G047100 [exp] 48 / 2e-06 AT1G67856 133 / 4e-41 RING/U-box superfamily protein (.1) Potri.010G168300 [exp] 49 / 3e-06 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.010G245801 [exp] 48 / 3e-06 AT2G27940 61 / 1e-11 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039848 [exp] 902 / 0 AT2G20650 846 / 0.0 RING/U-box superfamily protein (.1.2) Lus10018613 [exp] 865 / 0 AT2G20650 815 / 0.0 RING/U-box superfamily protein (.1.2) Lus10024629 [exp] 51 / 2e-07 AT5G05530 54 / 2e-09 RING/U-box superfamily protein (.1) Lus10032265 [exp] 51 / 2e-07 AT3G19950 54 / 2e-09 RING/U-box superfamily protein (.1) Lus10040783 [exp] 47 / 1e-05 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10012819 [exp] 46 / 3e-05 AT1G26800 182 / 6e-58 RING/U-box superfamily protein (.1) Lus10025146 [exp] 45 / 3e-05 AT3G10910 128 / 8e-38 RING/U-box superfamily protein (.1) Lus10020258 [exp] 47 / 4e-05 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10002637 [exp] 47 / 4e-05 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10005237 [exp] 46 / 4e-05 AT1G14200 72 / 1e-15 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.017G012600.1 pacid=42814123 polypeptide=Potri.017G012600.1.p locus=Potri.017G012600 ID=Potri.017G012600.1.v4.1 annot-version=v4.1 ATGGTTTTTGGGTTTTTTGATATGGTTAATTCAGAGGGATTTTCGTGGAGGAGAGGGTTAGGGTTTGTGGTTTGGATTGTTTTTTGGTTATGGTTTGTGT TTTTGGGTTTGTTACAGCCTGTGGTGGGGTTAAGGCCATTGAGAGAGCGTGCTCAGTCATGGGGCGATGAGTGGTTATTTATTAGAAAAGATGAAAACGA TTTGGGTCCATTTTCTATGTGGAACATAACGGGAACTTACCGAGGGTCATGGAAATTTCTCGATTCTACAAATAGCTCTTCCAAGTTCCCGGATCTTAGG AAATCTAATGGTGATTCTGTCATTGAATTATTCAGCAGACCAACGAAGATAAATGGTGTACATTATGTCCAGGGTGTAATAATTTTCCATGATGTGTTCA ACAATGAACACAATGTTGGTGGTGCTCAAATAAGGGTAGAAGGTGTTTATATATGGCCTTTTAGACAACTTCGAATGGTAACTAACAGTGGTAAAGAGGG AGAATTGAGCCAAGAAGAAGAATATATCTTATCTAATCCATATCATCTGCTTGGAGTATTTTCATCTCAGGTGTTCCAAGATTCTCCCCGAGATAAAATA TGGAGAAGGAAAAATTCACCAATATATGAGATGGAGAAGCAATGTAGTATTGAAATTGCAGCCCAAATTACACGCTTGTCATCTGCCCAAAGTGATGGAG ATCGTGACCGTTTCCATATTGAAGGAATAATGGAGAGTCCTGCCACAGACGATGAAGGGGAATGCTTCTCACCTTTACTACTAAATGCTACTTCTGTGAA CATTGAGGTCTACTATAACAAAGCAGTGAACTATACCTTGATGGTCACCTTTGTCTCGTTCCTTCAAGTTCTTTTGTTGATTCGGCAAATGGAACACGGC AACACTCAATCAGGAGCTGCCAAAGTTTCGATTTTAATGATCGGGCAGCAAGCCATCATGGATGCTTATCTTTGTCTTCTACACCTAACAGCAGGAATAC TAGTTGAATCCTTGTTTAATGCTTTTGCAACTGCCGCATTTTTCAAGTTTGTAGTCTTCTCAATTTTTGAGATGAGATATCTTCTTGCTATATGGAAGGC AAGCAGGCCTATGAATAGTGGTGAAGGTTGGGAGACAATGAGGCGTGAGCTATCAGTTCTATACAGTCGTTTCTATGGGATCCTGTTGGGAGGCATTCTA TTTATGTACGAGTTCCATAATTATCTTCGACCCATTCTTCTCTTGATGTACTCCTTTTGGATACCTCAAATAATTACCAATGTCATTCGTGACTCAAGAA AACCTTTGCATCCTCATTACATCTTAGGCATGACTGTTACTCGTCTAGCAATCCCATTGTATATATTTGGATGTCCTTACAACTTTATGCGCATTGAGCC TGACAAGACTTGGTGTATATGTTTGAGTATATTCATTGGATTGCAAGCATCAATTCTTCTTCTTCAACACTATCTTGGGTCTCGGTGTTTCATTCCTCGA CAGATCCTACCTGAGAAATATTGCTACTATAGAAGGTTTGATAAGGATGCAAATCATGCTACAGACTGTGTCATCTGCATGACTTCCATTGATCTCACTC ATCGTTCTAATGATTGCATGGTAACTCCATGTGATCATTTCTTTCATTCTGGTTGTCTACAAAGGTGGATGGATATCAAGATGGAATGTCCAACTTGCCG GCGTCCACTACCACCAGCCTAG
AA sequence Show only first row Show all	>Potri.017G012600.1 pacid=42814123 polypeptide=Potri.017G012600.1.p locus=Potri.017G012600 ID=Potri.017G012600.1.v4.1 annot-version=v4.1 MVFGFFDMVNSEGFSWRRGLGFVVWIVFWLWFVFLGLLQPVVGLRPLRERAQSWGDEWLFIRKDENDLGPFSMWNITGTYRGSWKFLDSTNSSSKFPDLR KSNGDSVIELFSRPTKINGVHYVQGVIIFHDVFNNEHNVGGAQIRVEGVYIWPFRQLRMVTNSGKEGELSQEEEYILSNPYHLLGVFSSQVFQDSPRDKI WRRKNSPIYEMEKQCSIEIAAQITRLSSAQSDGDRDRFHIEGIMESPATDDEGECFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHG NTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPMNSGEGWETMRRELSVLYSRFYGILLGGIL FMYEFHNYLRPILLLMYSFWIPQIITNVIRDSRKPLHPHYILGMTVTRLAIPLYIFGCPYNFMRIEPDKTWCICLSIFIGLQASILLLQHYLGSRCFIPR QILPEKYCYYRRFDKDANHATDCVICMTSIDLTHRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20650			RING/U-box superfamily protein...		Potri.017G012600 [exp]	0	1
AT3G01810			unknown protein		Potri.001G333200 [exp]	1.41	0.9403
AT2G32850			Protein kinase superfamily pro...		Potri.001G228100 [exp]	1.73	0.9378
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Potri.009G075300 [exp]	2.82	0.9251
AT2G34410		RWA3	REDUCED WALL ACETYLATION 3, O-...		Potri.001G352300 [exp]	3.00	0.9462
AT3G60380			unknown protein		Potri.014G045300 [exp]	4.00	0.9126
AT5G26780		SHM2	serine hydroxymethyltransferas...		Potri.002G109200 [exp]	5.29	0.9362	SHMT3
AT4G10840			Tetratricopeptide repeat (TPR)...		Potri.014G100400 [exp]	7.07	0.9298
AT1G19870		IQD32	IQ-domain 32 (.1)		Potri.005G236200 [exp]	7.93	0.9253
AT4G22120			ERD (early-responsive to dehyd...		Potri.004G006000 [exp]	8.30	0.9043
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Potri.014G040300 [exp]	9.48	0.9143

Compare expression of checked genes

Potri.017G012600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.