Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44280 355 / 2e-117 ATRING1A ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) AT1G03770 313 / 5e-102 ATRING1B ARABIDOPSIS THALIANA RING 1B, RING 1B (.1.2.3) AT1G28327 62 / 1e-10 unknown protein AT4G21070 50 / 3e-06 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) AT2G32950 47 / 2e-05 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT3G23060 47 / 2e-05 RING/U-box superfamily protein (.1) AT1G06770 47 / 2e-05 DRIP1 DREB2A-interacting protein 1 (.1.2) AT2G30580 45 / 0.0001 BMI1A, DRIP2 DREB2A-interacting protein 2 (.1) AT2G34000 43 / 0.0001 RING/U-box superfamily protein (.1) AT1G18660 43 / 0.0005 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G138700 [exp] 580 / 0 AT5G44280 312 / 3e-100 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Potri.011G056300 [exp] 374 / 8e-126 AT5G44280 324 / 7e-106 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Potri.004G047000 [exp] 357 / 5e-119 AT5G44280 328 / 3e-107 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Potri.004G209600 [exp] 49 / 8e-07 AT4G38140 88 / 3e-23 RING/U-box superfamily protein (.1) Potri.010G077800 [exp] 51 / 1e-06 AT2G30580 352 / 4e-118 DREB2A-interacting protein 2 (.1) Potri.001G358100 [exp] 51 / 2e-06 AT4G21070 649 / 0.0 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Potri.008G161500 [exp] 49 / 4e-06 AT2G30580 317 / 4e-105 DREB2A-interacting protein 2 (.1) Potri.005G219000 [exp] 49 / 5e-06 AT2G30580 399 / 5e-137 DREB2A-interacting protein 2 (.1) Potri.005G054400 [exp] 48 / 1e-05 AT2G30580 310 / 5e-102 DREB2A-interacting protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018609 [exp] 345 / 5e-113 AT5G44280 375 / 3e-124 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10039845 [exp] 335 / 6e-109 AT5G44280 370 / 2e-122 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10022569 [exp] 46 / 2e-05 AT3G07200 81 / 3e-19 RING/U-box superfamily protein (.1.2) Lus10036151 [exp] 47 / 3e-05 AT4G21070 381 / 6e-118 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Lus10014749 [exp] 46 / 5e-05 AT2G30580 391 / 1e-133 DREB2A-interacting protein 2 (.1) Lus10033860 [exp] 45 / 9e-05 AT2G30580 386 / 1e-131 DREB2A-interacting protein 2 (.1) Lus10039001 [exp] 45 / 0.0002 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10021993 [exp] 44 / 0.0002 AT2G30580 276 / 5e-89 DREB2A-interacting protein 2 (.1) Lus10015722 [exp] 42 / 0.0007 AT1G18660 667 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10029990 [exp] 42 / 0.0008 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.017G013000.2 pacid=42812816 polypeptide=Potri.017G013000.2.p locus=Potri.017G013000 ID=Potri.017G013000.2.v4.1 annot-version=v4.1 ATGCCTGCCGACAACACCCCTCCTTCTTCACCACACAACGTTAATCCCCACAATGAAGAACAACAACATCAGCAGCAGCAACAACGAGACTTGTCTGAGC TGTCTCCTCCTCGACAAAACGGTCATCCAACTGACCAAGAACCACACCACCTTCAAAACGGCCAGCATCAAGAAGAAGGGGAAGAGGGAGAGGAAGAAGT AGACATCAAAGAACAAGAAGTTCAAAAAGAAGAAGAGGGAGTGGAAGGAGGAGGAGGAGGGGATGGGGAAGAAGGGAAAGAAGAATCTGATGGAACCCAG TCTTTTTCTTCGTCATCTTCTTCTTCCAGTTGTGAAGATGAGGAAAAGCCTGAATTTGTCTTTGTGGAACTTCCGGACATTCGTAAAGATGTGCAGTGTC CCATATGTTTAGGGATCATAAAGAAAACACGAACTGTAATGGAATGCCTGCACCGTTTTTGCAGGGAATGTATTGATAAATCAATGCGAATGGGGAACAA TGAGTGCCCTGCTTGCCGCACACATTGTGCAAGTCGGCGGTCCTTGAGAGACGATCCGAATTATGATGCCCTAATTGCAGCTTTATATCCAGACATTGAT AAGTATGAGGAGGAGGAATTGGCTTTTCACGAAGAGGAAATGACTCGGAACAAACAGATTCAAGCTTCAATTGCCCAAATAATTCAAAGACAGTCAGAAG CACTAGTTAAGAGACGCACAATGGGTAAAGAGTCAACTTTCATGACACGAACACGTCGGACTATTACAAGGAGGCGACGGAACAGTCGGAGCAGTGATTT TCAAGGATCTGAAGACATTGAGGATGAAAATGATGACAATATAGGCAAGGATTCATCTTCTGCTGATGAGCGCTCCACTGAAGTTAGGCATAGGAGGCCT AAGAGACGGTGGCCCTCCCAGCCTTCTTCTTCAGCAGTCAATTCAGAGGGTGGAGGTGCTGAAAATGATTTAGATTCAAACAGAGAAAACAGGGGATTAT CTCCTGGGCTTGCGTGGAACACAGAAATGCTTGCTTGGGGCAGGGGTGGTACTCGGAGTCACACACGATATGGCAATCCTAGTGGTTGCAACAACAAGAA TTCACGAAATACTCGCTTATCCAAGCTAGTAGAATATCTCAGAAGCTTAGATGAAAAAAATGACGAGTTGGATATCCATCTCAAGCTTATTTCCTTGGGC AATCAAAGTACACCAAGCTTGCAGCAGCCCTACCTTTGTTGCCGGCCCAGTTTGTCAGTTAAACACCTATGTGAATATGTTGCTCACCAGACGACTTTGC AAGCTGAGGAAGTTGAACTCTTGTTAATTAAGGGGAAGGCTGAAAATTTGTCAGCCAAACATTCTCAGATCCCTATGGATGAGCTGCAAATTTTGAAGGG ACAAGAAACAGTTGCAGGTCTTAAAGCAAGTTGCTCTTCCAGTAGAGATCATTTGATACTAGCATATCGGCAGAAGGAGATCATCAAAAGTTGA
AA sequence Show only first row Show all	>Potri.017G013000.2 pacid=42812816 polypeptide=Potri.017G013000.2.p locus=Potri.017G013000 ID=Potri.017G013000.2.v4.1 annot-version=v4.1 MPADNTPPSSPHNVNPHNEEQQHQQQQQRDLSELSPPRQNGHPTDQEPHHLQNGQHQEEGEEGEEEVDIKEQEVQKEEEGVEGGGGGDGEEGKEESDGTQ SFSSSSSSSSCEDEEKPEFVFVELPDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRMGNNECPACRTHCASRRSLRDDPNYDALIAALYPDID KYEEEELAFHEEEMTRNKQIQASIAQIIQRQSEALVKRRTMGKESTFMTRTRRTITRRRRNSRSSDFQGSEDIEDENDDNIGKDSSSADERSTEVRHRRP KRRWPSQPSSSAVNSEGGGAENDLDSNRENRGLSPGLAWNTEMLAWGRGGTRSHTRYGNPSGCNNKNSRNTRLSKLVEYLRSLDEKNDELDIHLKLISLG NQSTPSLQQPYLCCRPSLSVKHLCEYVAHQTTLQAEEVELLLIKGKAENLSAKHSQIPMDELQILKGQETVAGLKASCSSSRDHLILAYRQKEIIKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.017G013000 [exp]	0	1
AT2G43465			RNA-binding ASCH domain protei...		Potri.007G132100 [exp]	6.70	0.6940
AT2G02880			mucin-related (.1)		Potri.012G021000 [exp]	9.79	0.6665
AT3G56720			unknown protein		Potri.016G036000 [exp]	11.22	0.6546
AT5G19420			Regulator of chromosome conden...		Potri.003G197600 [exp]	12.16	0.6623
AT5G04895			DEA(D/H)-box RNA helicase fami...		Potri.010G246000 [exp]	19.10	0.6615
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.005G251700 [exp]	22.18	0.5569
AT4G08350		GTA2, GTA02	global transcription factor gr...		Potri.004G162500 [exp]	26.26	0.6608
AT5G06350			ARM repeat superfamily protein...		Potri.011G096201 [exp]	28.00	0.5394
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Potri.006G139900 [exp]	29.41	0.5162
AT1G21610			wound-responsive family protei...		Potri.007G101201 [exp]	29.66	0.6597

Compare expression of checked genes

Potri.017G013000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.