Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03780 667 / 0 AtTPX2, TPX2 targeting protein for XKLP2 (.1.2.3) AT5G44270 121 / 4e-30 TPX2 (targeting protein for Xklp2) protein family (.1) AT4G22860 120 / 2e-28 Cell cycle regulated microtubule associated protein (.1.2) AT4G11990 100 / 7e-22 Cell cycle regulated microtubule associated protein (.1) AT5G15510 74 / 1e-13 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT3G01015 71 / 2e-12 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G37478 56 / 9e-09 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G07170 52 / 1e-06 Cell cycle regulated microtubule associated protein (.1) AT5G62240 49 / 7e-06 Cell cycle regulated microtubule associated protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G138600 [exp] 1055 / 0 AT1G03780 672 / 0.0 targeting protein for XKLP2 (.1.2.3) Potri.003G117800 [exp] 132 / 2e-32 AT4G22860 377 / 8e-126 Cell cycle regulated microtubule associated protein (.1.2) Potri.001G114400 [exp] 112 / 5e-26 AT4G22860 353 / 4e-117 Cell cycle regulated microtubule associated protein (.1.2) Potri.017G092100 [exp] 70 / 3e-12 AT5G15510 403 / 5e-136 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.004G118700 [exp] 68 / 2e-11 AT5G15510 410 / 8e-139 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.017G144061 [exp] 55 / 2e-08 AT5G37478 154 / 5e-48 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.012G130300 [exp] 51 / 3e-06 AT4G22860 164 / 2e-45 Cell cycle regulated microtubule associated protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018608 [exp] 667 / 0 AT1G03780 741 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10033674 [exp] 657 / 0 AT1G03780 718 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10017715 [exp] 639 / 0 AT1G03780 687 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10039844 [exp] 621 / 0 AT1G03780 689 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10006677 [exp] 101 / 4e-22 AT4G22860 345 / 5e-113 Cell cycle regulated microtubule associated protein (.1.2) Lus10010706 [exp] 71 / 2e-12 AT5G15510 476 / 2e-165 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10030650 [exp] 69 / 6e-12 AT5G15510 404 / 4e-137 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10030836 [exp] 69 / 6e-12 AT3G01015 413 / 8e-141 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10007022 [exp] 59 / 5e-09 AT4G22860 209 / 3e-63 Cell cycle regulated microtubule associated protein (.1.2) Lus10007382 [exp] 57 / 7e-09 AT5G37478 149 / 1e-45 TPX2 (targeting protein for Xklp2) protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [poplar] [flax] TPX2 Targeting protein for Xklp2 (TPX2) domain PF12214 [poplar] [flax] TPX2_importin Cell cycle regulated microtubule associated protein
Representative CDS sequence Show only first row Show all	>Potri.017G013100.4 pacid=42813216 polypeptide=Potri.017G013100.4.p locus=Potri.017G013100 ID=Potri.017G013100.4.v4.1 annot-version=v4.1 ATGGCAGCGGAGAGTGAGGATTCTTCAACTGCAACGACAATGACGAATACGACGACGTTGATGATGTTTGTAGATGAGGCGTACGAGTTTTCGGCTCCGA AGTTTTATGATTTTGTGAAAGGAGAATCGGATGAAGATTCTAGAAACGCTGAGCTTTGGTTCGATGTTACGGCGTCCTACGCTCCTTCTCCTTTTATGCC TAGAATTAAGACTGGTAGATCATTTAAGGTAGAGACCTTATGTGATTTTAGCCAAGCAGACCAGTTTCACAAGGTGGCAGAATCATCTGATTCAAAAGCT TCAGACAGTAACTCTCAATCAGAGGTCATGCCACCACCCGCAGAAGCAGCAGCACCTATTGGAACGGGGAAAGAAGAAAAAACTTCTGATGAGGATAACA AAGAAAACAATGCTAACCTTGTCAATGTAATTTCTGCTGGTGAGGTTACTTGTGAAAAAGAGAAGAAGGTGGGGTTTGCATGTGCTGAAGGAAATGAAAG AAGCACTTCTTCTCTGCAAACTGAGAACGCTGATGGTAAAGAGAGCAGTAAAAATGAAGCTTACTGCACCCCTAAGCCACCAATGTCTTCTAGGAACAGA GGCCCGTTGACTGATTCCAAGAAGAACCACTCAGCTAGACACATAGCTAGCTTGGTTAGGAATCCATCTTTGCTGAAGCCAAAGAGTCAATCACAGTCTT CACAAGTTAAGGGAATCAAACCAGCAAGTGTCAAAAAAGATCGTAATGTGAAAAATGTTGCTGGGACTACCAATTTAGCCCAAGAGAACCAGGCGATTAA GAAACAGAAGCTGGAGGGAGGGAGATCCAGACAGATTCTTAATGCCAAGCCCCCACAACCATTGACACACAAGTCCAAACTGGGACTTAGCAGTGGCAGT TCTAACTTGTGTTCATCTGTTGCTAATAAAATGAAGAAAGAGGAGAGAAAGGTTTATGTTCGGGAACAAGCAGCTCCAGGTCCATTTGTTTCAACGGCAG AAATGATGAATAAGTTTCAATCAAATACTAGAGGATTGTCAATGCCACGCTTTAACAATTCTATCTCACATGATGGTCCTGCATCTGTTATCCAGAGGAA ACCTAAGCTCACACTGACAAGGCCTAAGGAGCCTGAATTTGAAACAGCTCAGCGCGTTCGCTCAGTCAAAATAAAAAGTTCTGCTGAGATTGAAGAAGAG ATGATGGCCAAAATTCCCAAGTTCAAAGCTAGACCACTGAACAAGAAGATTCTGGAAGCTGCAACATTACCTGCATTGCCAAGAAGCACTCCACAGCCAC CTGAGTTCCTGGAGTTTCACTTAGAGACAGCAGCAAGGGCAAATCAGAATGCAGAATCAACTTCAGTGGCTTCAACAGAAGTGTCTCATCAGAGTAATCT ATGGAAACCTCATCATCTTACAGAGCCCAAAACCCCTGTTCTTCATACATCTTTAAGGGCCCGTCCAGCAAGGGTGAAAAGTTCTTTAGAGCTAGAGAAA GAGGAGATAGAAAAGTTCCCTAAATTTAAAGCAAGACCTCTGAATAAGAAGATATTTGAAAGTAAAGGAGCGATGGGGATTTTCTGCCATGCAAAGAAGC AAGTCACCGTACCTCAAGAATTTCACTTTGCCACAAACGAGAGGATTCCACCACAAGCTGCTGTTGCTGATATGTTTGACAAGCTCTCACTGAGGTCAGA ACCTATCCTTGACAACCCGATTCCAAGAAACACAAAGCCAAATCCATTCCATCTCCACACAGAGGAAAGAGGGGCCGAAAAAGAGAGGAAATTCTGGATG GAACTTGTGCAGAAACAGATGGAAGAGGAAAGAGCAAGAGTTCCTAGGGCCAATCCTTATCCTTATACCACTGACTATCCTGTGGTTCCACCAAGACCAG AGCCCAAACCATGCACAAAACCAGAACCTTTCCAATTGGAGAGTTTAGTAAGGCACGAGGAGGAAATGCAAAGGGAAATGGAAGAAAGAGAAAGGAAGGA AAAAGAAGAGGCCCAGATGAGGATATTCAGAGCACAGCCAGTCCTTAAAGAGGACCCAATTCCAGTACCAGAGAAAGCGCGAAAACCACTCACACAGGTT CAACAATTCAATCTCCATGCAGATCAGAGGGCTGTTGAAAGGGCAGAATTTGACCACAAGGTAAAGGAGAAAGAAATGTTGTACAAGAGATACAGAGAGG AGAGTGAAACTGCAAAGATGATGGAGGAGGAAAAGGCGTTGAAACAGCTGCGGAGAACGATGGTTCCCCATGCCCGGCCAGTGCCGAATTTTAACCATCC ATTCTGCCCCCAGAAGTCATCCAAGGAAGCTACAAAGGCAAAGTCACCTAATTTAAGAGTGCTCCAGAGAAGAGAGAGAAGGAAGATGATGATGGTGAAC GCTGCTTCATCTGCCGCCGCTTCTGGCATGAGATGA
AA sequence Show only first row Show all	>Potri.017G013100.4 pacid=42813216 polypeptide=Potri.017G013100.4.p locus=Potri.017G013100 ID=Potri.017G013100.4.v4.1 annot-version=v4.1 MAAESEDSSTATTMTNTTTLMMFVDEAYEFSAPKFYDFVKGESDEDSRNAELWFDVTASYAPSPFMPRIKTGRSFKVETLCDFSQADQFHKVAESSDSKA SDSNSQSEVMPPPAEAAAPIGTGKEEKTSDEDNKENNANLVNVISAGEVTCEKEKKVGFACAEGNERSTSSLQTENADGKESSKNEAYCTPKPPMSSRNR GPLTDSKKNHSARHIASLVRNPSLLKPKSQSQSSQVKGIKPASVKKDRNVKNVAGTTNLAQENQAIKKQKLEGGRSRQILNAKPPQPLTHKSKLGLSSGS SNLCSSVANKMKKEERKVYVREQAAPGPFVSTAEMMNKFQSNTRGLSMPRFNNSISHDGPASVIQRKPKLTLTRPKEPEFETAQRVRSVKIKSSAEIEEE MMAKIPKFKARPLNKKILEAATLPALPRSTPQPPEFLEFHLETAARANQNAESTSVASTEVSHQSNLWKPHHLTEPKTPVLHTSLRARPARVKSSLELEK EEIEKFPKFKARPLNKKIFESKGAMGIFCHAKKQVTVPQEFHFATNERIPPQAAVADMFDKLSLRSEPILDNPIPRNTKPNPFHLHTEERGAEKERKFWM ELVQKQMEEERARVPRANPYPYTTDYPVVPPRPEPKPCTKPEPFQLESLVRHEEEMQREMEERERKEKEEAQMRIFRAQPVLKEDPIPVPEKARKPLTQV QQFNLHADQRAVERAEFDHKVKEKEMLYKRYREESETAKMMEEEKALKQLRRTMVPHARPVPNFNHPFCPQKSSKEATKAKSPNLRVLQRRERRKMMMVN AASSAAASGMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Potri.017G013100 [exp]	0	1
AT1G18550			ATP binding microtubule motor ...		Potri.012G058400 [exp]	2.00	0.9716
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Potri.009G058900 [exp]	3.87	0.9703	TOP2.3
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Potri.013G048900 [exp]	3.87	0.9690	Pt-CDC20.4
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Potri.012G054400 [exp]	4.47	0.9700
AT3G20150			Kinesin motor family protein (...		Potri.001G360200 [exp]	4.69	0.9711
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Potri.019G021800 [exp]	5.19	0.9615	Pt-CDC20.3
AT2G37420			ATP binding microtubule motor ...		Potri.006G082900 [exp]	5.47	0.9566
AT5G56120			unknown protein		Potri.001G470800 [exp]	8.06	0.9595
AT4G17000			unknown protein		Potri.001G287800 [exp]	8.48	0.9476
AT2G38620		CDKB1;2	cyclin-dependent kinase B1;2 (...		Potri.016G142800 [exp]	8.71	0.9553	CDC2.2,CDC2.4

Compare expression of checked genes

Potri.017G013100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.