Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28400 440 / 2e-157 Protein phosphatase 2C family protein (.1) AT2G20630 419 / 3e-149 PIA1 PP2C induced by AVRRPM1 (.1.2) AT3G15260 410 / 8e-146 Protein phosphatase 2C family protein (.1.2) AT1G22280 328 / 2e-113 PAPP2C phytochrome-associated protein phosphatase type 2C (.1.2.3) AT1G34750 317 / 5e-109 Protein phosphatase 2C family protein (.1) AT1G78200 306 / 1e-104 Protein phosphatase 2C family protein (.1.2) AT2G34740 307 / 3e-104 Protein phosphatase 2C family protein (.1.2) AT4G31750 212 / 2e-67 WIN2 HOPW1-1-interacting 2 (.1) AT5G24940 214 / 2e-66 Protein phosphatase 2C family protein (.1) AT5G10740 210 / 3e-66 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G116700 [exp] 428 / 7e-153 AT3G15260 439 / 5e-157 Protein phosphatase 2C family protein (.1.2) Potri.001G398100 [exp] 426 / 3e-152 AT3G15260 469 / 7e-169 Protein phosphatase 2C family protein (.1.2) Potri.005G164600 [exp] 342 / 7e-119 AT1G34750 450 / 1e-161 Protein phosphatase 2C family protein (.1) Potri.006G081400 [exp] 342 / 1e-118 AT4G28400 348 / 3e-121 Protein phosphatase 2C family protein (.1) Potri.002G097200 [exp] 341 / 1e-118 AT1G34750 449 / 2e-161 Protein phosphatase 2C family protein (.1) Potri.018G150800 [exp] 335 / 5e-116 AT4G28400 340 / 1e-117 Protein phosphatase 2C family protein (.1) Potri.002G074500 [exp] 212 / 2e-67 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 211 / 2e-67 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.005G186001 [exp] 209 / 9e-67 AT1G43900 422 / 4e-149 Protein phosphatase 2C family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039853 [exp] 461 / 7e-166 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10018618 [exp] 461 / 8e-166 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10028094 [exp] 342 / 2e-118 AT4G28400 360 / 8e-126 Protein phosphatase 2C family protein (.1) Lus10040565 [exp] 341 / 3e-118 AT4G28400 359 / 1e-125 Protein phosphatase 2C family protein (.1) Lus10020924 [exp] 338 / 2e-117 AT1G34750 438 / 7e-157 Protein phosphatase 2C family protein (.1) Lus10005405 [exp] 332 / 4e-115 AT3G15260 370 / 3e-130 Protein phosphatase 2C family protein (.1.2) Lus10008556 [exp] 328 / 3e-113 AT4G28400 352 / 1e-122 Protein phosphatase 2C family protein (.1) Lus10033453 [exp] 303 / 9e-104 AT1G34750 369 / 7e-130 Protein phosphatase 2C family protein (.1) Lus10038455 [exp] 303 / 2e-103 AT2G34740 327 / 1e-112 Protein phosphatase 2C family protein (.1.2) Lus10009210 [exp] 276 / 5e-92 AT3G15260 300 / 4e-101 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.017G013300.3 pacid=42812856 polypeptide=Potri.017G013300.3.p locus=Potri.017G013300 ID=Potri.017G013300.3.v4.1 annot-version=v4.1 ATGACTAGTACGGGCAGGGAGATTCTCCACAAGATGAAGGTGAAGGCTGGATTGAGTTCATCTGCATCTGGTGACACAGGGAAAGGCAAGAGCAAGATGT CAAAGCATATTACACATGGTTATCATACGGTGGAGGGAAAATCAAATCATGCCATGGAAGATTATGTAGTCTCTGATTTCAAGCAAGTGCATGACAAAGA GTTGGGCTTATTTGCTATATTTGATGGTCATTTGGGACATGATGTTGCAAGCTACTTACAAACACATTTGTTCGATAATATCTTGAAAGAGCATGACTTC TGGACTGATACGGAGAGTGCAATAAGGAGAGCTTATCGTGCAACGGATGCTGAGATATTGGAGAATGCGATTGCCTTAGGAAAGGGAGGATCAACTGCTG TTACAGCAATACTGATCAATGGCCAGAAGCTAGTAGTAGCAAATGTGGGAGATTCTCGAGCAGTTATGTGCAAGAATGGTGTGGCCAAACAGCTGTCTGT TGATCATGAGCCAAGCAGGGAAAAGGGAATGATCGAGAGTCGAGGTGGTTTTGTGTCAAATATTCCTGGGGATGTCCCACGAGTCGATGGGCAGCTTGCT GTAGCGAGGGCATTTGGTAACAAGAGCTTGAAGATACACCTCAGTTCCGAACCTGATATGTCCGAGCAGATGATTCACAATGATATAGAGTTTCTCATTC TGGCAAGTGATGGCATATGGAAGGTGATGTCAAACCAAGAAGCAGTAGACTGTATAAAGCACATTAAGGATGCTCATTCAGCAGCGAAGAACCTGGTAGA AGAGGCACTTTCCAGGAAAAGTAAGGATGACATATCTTGCATAGTTGTAAGGTTTCGATGA
AA sequence Show only first row Show all	>Potri.017G013300.3 pacid=42812856 polypeptide=Potri.017G013300.3.p locus=Potri.017G013300 ID=Potri.017G013300.3.v4.1 annot-version=v4.1 MTSTGREILHKMKVKAGLSSSASGDTGKGKSKMSKHITHGYHTVEGKSNHAMEDYVVSDFKQVHDKELGLFAIFDGHLGHDVASYLQTHLFDNILKEHDF WTDTESAIRRAYRATDAEILENAIALGKGGSTAVTAILINGQKLVVANVGDSRAVMCKNGVAKQLSVDHEPSREKGMIESRGGFVSNIPGDVPRVDGQLA VARAFGNKSLKIHLSSEPDMSEQMIHNDIEFLILASDGIWKVMSNQEAVDCIKHIKDAHSAAKNLVEEALSRKSKDDISCIVVRFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28400			Protein phosphatase 2C family ...		Potri.017G013300 [exp]	0	1
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Potri.005G070900 [exp]	1.73	0.8648
AT4G05030			Copper transport protein famil...		Potri.006G001800 [exp]	2.00	0.8329
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Potri.006G061800 [exp]	3.00	0.7971
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Potri.007G025200 [exp]	3.16	0.8294
AT3G11760			unknown protein		Potri.018G027200 [exp]	3.87	0.8356
AT3G25730	AP2_ERF	EDF3	ethylene response DNA binding ...		Potri.004G220700 [exp]	4.00	0.8644
AT4G37630		CYCD5;1	cyclin d5;1 (.1.2)		Potri.014G016700 [exp]	4.47	0.7596
					Potri.001G142150 [exp]	4.58	0.8104
AT1G78280			transferases, transferring gly...		Potri.002G099400 [exp]	5.47	0.8153
AT3G19240			Vacuolar import/degradation, V...		Potri.009G102000 [exp]	6.48	0.7774

Compare expression of checked genes

Potri.017G013300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.