Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03790 265 / 2e-85 C3HZnF SOM SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G44260 226 / 9e-71 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G19810 217 / 2e-67 C3HZnF AtOZF1 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) AT4G29190 216 / 5e-67 C3HZnF AtOZF2 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G25900 208 / 2e-64 C3HZnF ATTZF1, ATCTH A. THALIANA TANDEM ZINC FINGER PROTEIN 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT2G41900 190 / 3e-54 C3HZnF OXS2 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G58620 183 / 3e-52 C3HZnF zinc finger (CCCH-type) family protein (.1) AT5G12850 182 / 2e-51 C3HZnF PEI1 CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G07500 171 / 7e-51 C3HZnF PEI1 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G40140 166 / 5e-46 C3HZnF ATSZF2, CZF1, ZFAR1 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G138300 [exp] 590 / 0 AT1G03790 233 / 2e-73 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.006G234300 [exp] 230 / 4e-72 AT4G29190 306 / 4e-102 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.018G058600 [exp] 220 / 3e-68 AT2G19810 314 / 4e-105 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Potri.006G053900 [exp] 189 / 5e-54 AT2G41900 791 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.016G053700 [exp] 187 / 4e-53 AT2G41900 820 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053800 [exp] 187 / 4e-53 AT2G41900 817 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.001G266700 [exp] 187 / 4e-53 AT2G41900 708 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.009G061000 [exp] 181 / 1e-50 AT2G41900 672 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.009G046800 [exp] 180 / 2e-50 AT5G58620 553 / 0.0 zinc finger (CCCH-type) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017708 [exp] 265 / 6e-87 AT1G03790 252 / 7e-82 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10018621 [exp] 256 / 1e-82 AT1G03790 245 / 3e-78 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10033665 [exp] 229 / 1e-72 AT1G03790 240 / 6e-77 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10035006 [exp] 224 / 1e-69 AT2G19810 380 / 2e-131 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10012922 [exp] 223 / 2e-69 AT2G19810 387 / 9e-134 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10019709 [exp] 186 / 3e-52 AT2G41900 759 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Lus10028970 [exp] 177 / 2e-49 AT2G40140 615 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10007493 [exp] 174 / 2e-48 AT2G40140 614 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10040662 [exp] 155 / 3e-43 AT5G58620 341 / 2e-112 zinc finger (CCCH-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Potri.017G013400.1 pacid=42813414 polypeptide=Potri.017G013400.1.p locus=Potri.017G013400 ID=Potri.017G013400.1.v4.1 annot-version=v4.1 ATGAGCACCATTTGTGCCGAGCAACACAAGCCCTACACTCCTCACCAACTTCTTTCTCCCAAGAGACCCTTCAGAGATCTTGAGATTCTACCAGGAAAAC TCCTTACAAAGAAAACCCATCAAGAAACCCTAGACATGTCTCCATATGAGACTAATCTTCAGAGATTCCTTCCTTATAATGACTACAGCAATGAGAAGGT TCTTGATGGTGAGCTAGATCCGTACTCTTCTGACCATTTCCGCATGTATGAGTTCAAAGTTCGTCGCTGCACGCGCAGCCGTAGCCATGACTGGACCGAC TGCCCCTTTGCTCATCCTGGCGAAAAGGCTCGTAGGAGAGACCCTCGTAGGTTTCACTACTCTGGAATTGTTTGCCCTGAGTTTAAGCGTGGAGGGTGTA GCCGTGGAGAGAATTGTGAGTTTTCTCATGGTGTTTTTGAGTGTTGGCTGCACCCTTCTCGTTATCGAACCGAGGCTTGCAAAGATGGCAAGAATTGTAA GCGAAAGGTTTGTTTCTTCGCTCACTCCCCTCGCCAACTTCGCATTTTGCCTGAGGTTTCTTCACGCAATAAGAGCTTGGCTTCACCATGTTCATCTCTC AATCATAGTCATTGTTGTGTTGTTTGCCATTCTATGACTTCCTCTCCGACCTCTACTCTCCTTGGTATGTCCCACATGTCACCGCCATTGTCACCATCAT TATCACCACCTCTATCACCGGTGAAACACCAATCCTTATCCGGGTTTTCGCCAATCTCCCGATATAATGAAACGCTGAGCAAGTTTAGGGCTGGAGTTGT GAGTTACAAAGATGTGCTCAGTGAGCTAATGAGTTCTTTAGAAGCAATGAATTTCAACGAAGGAGCGAGTGTTTCTTCACCTATGTCCTTATCTACTAAT CACAACAGGAATGTCAACAGCACCACTCCATGGAATATTGATGTCTCTTTCAGTGGAGAAGATCAGCCACAATTCATTCTTTCACCTTCAACTCCAACCC CTTCATCAAAATTTTTCAATGGAGATTGTTCAAGCAATAAGGGCCTGTTCGTTGATGACAAGATTAATGATCATAATAATATTGGTGATGGTGGTTTGGC TTGTACTTCTGATCCTGACCTTGGATGGGTTAATGAGCTCTTAATGTAG
AA sequence Show only first row Show all	>Potri.017G013400.1 pacid=42813414 polypeptide=Potri.017G013400.1.p locus=Potri.017G013400 ID=Potri.017G013400.1.v4.1 annot-version=v4.1 MSTICAEQHKPYTPHQLLSPKRPFRDLEILPGKLLTKKTHQETLDMSPYETNLQRFLPYNDYSNEKVLDGELDPYSSDHFRMYEFKVRRCTRSRSHDWTD CPFAHPGEKARRRDPRRFHYSGIVCPEFKRGGCSRGENCEFSHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRILPEVSSRNKSLASPCSSL NHSHCCVVCHSMTSSPTSTLLGMSHMSPPLSPSLSPPLSPVKHQSLSGFSPISRYNETLSKFRAGVVSYKDVLSELMSSLEAMNFNEGASVSSPMSLSTN HNRNVNSTTPWNIDVSFSGEDQPQFILSPSTPTPSSKFFNGDCSSNKGLFVDDKINDHNNIGDGGLACTSDPDLGWVNELLM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Potri.017G013400 [exp]	0	1
AT3G55700			UDP-Glycosyltransferase superf...		Potri.010G195600 [exp]	1.00	0.8424
AT5G55340			MBOAT (membrane bound O-acyl t...		Potri.016G014700 [exp]	2.23	0.7997
AT5G59845			Gibberellin-regulated family p...		Potri.014G020100 [exp]	3.74	0.8343
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Potri.003G151750 [exp]	3.87	0.8202
ATMG00810		ATMG00810.1, OR...	DNA/RNA polymerases superfamil...		Potri.013G138801 [exp]	4.24	0.7843
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Potri.013G108900 [exp]	5.65	0.7539
AT3G50120			Plant protein of unknown funct...		Potri.006G042946 [exp]	6.48	0.7967
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.003G009000 [exp]	17.43	0.7453
					Potri.014G094600 [exp]	23.66	0.6835
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Potri.002G018800 [exp]	24.81	0.8001

Compare expression of checked genes

Potri.017G013400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.