Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44240 1941 / 0 ALA2 aminophospholipid ATPase 2 (.1.2) AT5G04930 560 / 0 ALA1 aminophospholipid ATPase 1 (.1) AT1G17500 553 / 2e-177 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G27870 545 / 8e-175 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G13210 542 / 1e-173 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT1G26130 537 / 5e-172 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT3G25610 522 / 5e-166 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G68710 521 / 1e-165 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G59820 513 / 3e-162 ALA3 aminophospholipid ATPase 3 (.1) AT1G72700 354 / 9e-104 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G109200 [exp] 593 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1) Potri.008G014600 [exp] 559 / 1e-179 AT5G04930 1665 / 0.0 aminophospholipid ATPase 1 (.1) Potri.010G246200 [exp] 550 / 3e-176 AT5G04930 1693 / 0.0 aminophospholipid ATPase 1 (.1) Potri.001G349100 [exp] 545 / 3e-175 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G014400 [exp] 544 / 6e-175 AT5G04930 1610 / 0.0 aminophospholipid ATPase 1 (.1) Potri.012G058000 [exp] 543 / 5e-174 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G197500 [exp] 523 / 6e-166 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G111200 [exp] 510 / 2e-161 AT1G68710 1767 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G132700 [exp] 504 / 4e-159 AT1G68710 1753 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039855 [exp] 1405 / 0 AT5G44240 1412 / 0.0 aminophospholipid ATPase 2 (.1.2) Lus10018620 [exp] 1302 / 0 AT5G44240 1309 / 0.0 aminophospholipid ATPase 2 (.1.2) Lus10022238 [exp] 561 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10034872 [exp] 536 / 2e-171 AT5G04930 1712 / 0.0 aminophospholipid ATPase 1 (.1) Lus10037622 [exp] 530 / 1e-168 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10033406 [exp] 528 / 3e-168 AT5G04930 1704 / 0.0 aminophospholipid ATPase 1 (.1) Lus10035069 [exp] 524 / 1e-166 AT3G25610 1783 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10028873 [exp] 519 / 3e-165 AT5G04930 1676 / 0.0 aminophospholipid ATPase 1 (.1) Lus10019152 [exp] 518 / 2e-164 AT3G25610 1871 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008945 [exp] 517 / 2e-164 AT5G04930 1681 / 0.0 aminophospholipid ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase CL0137 [poplar] [flax] PF16209 [poplar] [flax] PhoLip_ATPase_N Phospholipid-translocating ATPase N-terminal CL0137 [poplar] [flax] PF16212 [poplar] [flax] PhoLip_ATPase_C Phospholipid-translocating P-type ATPase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.017G013500.1 pacid=42813241 polypeptide=Potri.017G013500.1.p locus=Potri.017G013500 ID=Potri.017G013500.1.v4.1 annot-version=v4.1 ATGAAGCGGTTCGTCTACATCAACGACGATGAGTCATCGCCTACACATGATCTTTACTGCGACAACCGCATTTCCAATCGGAAATACACTCTCCTCAATT TCCTCCCTAAAAATCTCATGGAGCAGTTCAGTCGGTTTATGAACCAGTATTTCTTGTTGATTGCGTGTCTTCAATTATGGTCGCTTATTACCCCGGTGAA TCCGGCGAGCACTTGGGGGCCGTTGATTTTTATATTTGCTGTGTCTGCGACGAAAGAGGCTTGGGATGATTATAATAGATATTTGTCTGATAAGAAGGCG AATGAGAAGCAAGTTTGGATTGTTAGGAAGGGGATCAAGAAACATATTCAAGCGCAGGATATATGTGTCGGTAATTTAGTGTGGCTTCGTGAGAATGATG AAGTGCCGTGCGATCTTGTTTTGATTGGTACATCAGATCCTCAAGGGCTTTGTTATATAGAGACAGCCGCTCTAGATGGTGAAATTGATTTGAAGACAAG GGTAACACCCTCTGCCTGCATGGGGATAGATTTTGAATTATTGCACAAAATTAAGGGTGTCATTGAATGCCCCAATCCTGATAAGGACATCCGACGACTT GATGCAAATTTACGCTTGTTTCCTCCATTTATTGATAATGATGTATGCCCATTGACCATAAAAAACACAATTCTTCAGTCATGCTACTTGCGTAACACTG AGTGGGCGTGTGGAGTTGCTGTCTACACAGGTAATGAGACTAAGCTGGGTATGAGTAGGGGTATACCTGAACCAAAGCTGACAGCTTTGGATGCCATGAT TGACAAGTTGACTGGAGCTATATTTGTTTTTCAAATAGTGGTTGTTATGGTTCTAGGGATAGCCGGGAATGTCTGGAAGGACACTGAAGCTAGAAAGCTA TGGTATGTTTTATATCCAGATGAGGGTCCTTGGTATGAGCTACTAGTGATCCCTCTACGGTTTGAGCTTCTCTGTTCCATCATGATTCCGATATCGATTA AGGTATCTCTGGATCTTGTTAAGAGCTTATATGCAAAGTTCATTGATTGGGATAGGGAGATGATTGACCTAGAAACCGAGACTCCATCCCACGCGACAAA CACAGCAATAAGTGAGGATCTTGGGCAAGTTGAGTACATTTTGACTGACAAAACCGGAACCCTCACTGAAAATAAAATGGTTTTCAGAATATGTTGCATC AGTGGCAATTTTTATGGGAATGAGGCTGGGGATGCTTCGAAAGATAAGCAACTGTTAAATGCCATTTCTAGTGGATCTCCTGATGTTGTTCGGTTTCTCA CAGTCATGGCAATATGTAATACTGTTATACCTGTCCAAAGCAAAACTGGAGCTATCTTGTACAAAGCGCAATCCCAGGATGAGGACGCACTTGTCCATGC TGCTGCTAAGTTAAACATGGTCCTCGTCTGTAAAAATGGAAATATTCTTGAGCTTAGATTCAATACTTCAGCAATTCAGTATGAAGTACTGGAAACTCTG GAGTTCACATCTGATAGGAAAAGAATGTCAGTAGTGGTGAGAGATTGCCAAAATGGAAAGATTTTGCTTTTGTCAAAGGGAGCTGATGAAGCAATTCTTC CTTATGCTTCTCCTGGACAACAAACAAGGATATTTAATGAGGCTGTGGAACAATATTCTCAATTGGGGCTGCGCACATTATGCTTGGCTTGGCGGGAATT AAAAGAAGATGAATATGAGGAGTGGTCTTTTATGTTTAGAGAGGCCAGTAGTACTTTGGTTGATAGGGAGTGGAGAATAGCTGAGGTCTGCCAAAGATTA GAACGTGATCTTGAAGTTCTTGGAGTTACTGCCATAGAGGACCGTCTACAGGATGGTGTTCCAGAAACAATTTACACTTTAAGAAAAGCAGGAATACATT TTTGGATGCTTACTGGAGACAAGCAAAATACAGCCATACAAATTGCTCTCTCATGCAACTTCATTTCACCAGAGCCAAAAGGTCAGCTTCTATTAATTGA TGGAAAAACTGAAGAGGAAGTTGGTAGAAGTTTAGAGAGAGTTTTACTTACAATGAGGACAACAGCTTCAGAACCAAAGGATGTTGCATTTGTTGTTGAT GGCTGGGCTCTTGAAATTGCACTGAAGCATTACTGGAAAGCATTCACTGAATTAGCAATATTATCAAGAACTGCTATATGTTGCCGTGTGACACCATCTC AAAAAGCACAGCTTGTACAGATCTTAAAATCATGTGATTACCGGACTTTGGCAATTGGCGATGGTGGGAATGATGTGAGAATGATACAACAAGCTGACAT TGGGGTTGGCATTAGTGGGAGAGAAGGACTGCAGGCAGCCAGGGCAGCTGATTATAGCATTGGAAGATTCAGATTTCTAAAAAGATTGATTCTTGTCCAT GGCCGGTATTCGTATAACCGAACTGCATTCCTGTCCCAGTATTCTTTCTATAAATCCCTACTGATATGTTTCATCCAAATCTTCTTCTCTTTTATTTCAG GTGTCTCTGGGACCAGTCTTTTCAATTCTGTTAGTTTGATGGCTTATAACGTTTTTTACACCAGCATACCTGTTCTAGTTAGTGTCCTTGACAAAGATCT TAGTGAAGAAACTGTAATGCAGCATCCACAAATTCTGTTTTACTGTCAAGCTGGGAGGCTTCTTAACCCAAGCACATTTGCAGGATGGTTTGGCCGGTCC CTTTTTCATGCGATTGTTGTATTTGTAATCAGCATACATGCCTATGCATTTGAAAAAAGCGAAATGGAGGAGGTTGGGATGGTGGCACTCTCCGGATGTA TATGGTTACAGGCTTTTGTTGTAACATTAGAGACCAACTCCTTTACAATTTTGCAACATCTTGCCATATGGGGGAACTTGATTGCATTTTATGTCATCAA CTGGATTGTCAGTGCCATTCCATCATCAGGAATGTACACAATAATGTTCCGGTTATGTAGACAACCATCTTATTGGCTAACTATACTGCTCATCGTTGCG GCGGGGATGGGTCCAATTCTAGCTATAAAGTACTTCCGTTATACATACAGACCCAGCAAAATCAACACCCTTCAGCAGGCAGAACGTCTGGGTGGGCCAA TTTTGTCTCTCGGTAATATCGAGCCACCACAACAACGATTGATTGAGAAAGAAGTTGCTCCATTATCAATTACTCAATCGAAGAACAGAAACCCGGTTTA CGAACCTCTTCTCTCCGATTCTCCTAGCACCAGAAGGTCTTTCGGACCAGGAACTCCTTTTGATTTCTTTCAATCACAATCCAGATTATCTTCAAACTAC ACAAGGAACTGCAAGGACAATTGA
AA sequence Show only first row Show all	>Potri.017G013500.1 pacid=42813241 polypeptide=Potri.017G013500.1.p locus=Potri.017G013500 ID=Potri.017G013500.1.v4.1 annot-version=v4.1 MKRFVYINDDESSPTHDLYCDNRISNRKYTLLNFLPKNLMEQFSRFMNQYFLLIACLQLWSLITPVNPASTWGPLIFIFAVSATKEAWDDYNRYLSDKKA NEKQVWIVRKGIKKHIQAQDICVGNLVWLRENDEVPCDLVLIGTSDPQGLCYIETAALDGEIDLKTRVTPSACMGIDFELLHKIKGVIECPNPDKDIRRL DANLRLFPPFIDNDVCPLTIKNTILQSCYLRNTEWACGVAVYTGNETKLGMSRGIPEPKLTALDAMIDKLTGAIFVFQIVVVMVLGIAGNVWKDTEARKL WYVLYPDEGPWYELLVIPLRFELLCSIMIPISIKVSLDLVKSLYAKFIDWDREMIDLETETPSHATNTAISEDLGQVEYILTDKTGTLTENKMVFRICCI SGNFYGNEAGDASKDKQLLNAISSGSPDVVRFLTVMAICNTVIPVQSKTGAILYKAQSQDEDALVHAAAKLNMVLVCKNGNILELRFNTSAIQYEVLETL EFTSDRKRMSVVVRDCQNGKILLLSKGADEAILPYASPGQQTRIFNEAVEQYSQLGLRTLCLAWRELKEDEYEEWSFMFREASSTLVDREWRIAEVCQRL ERDLEVLGVTAIEDRLQDGVPETIYTLRKAGIHFWMLTGDKQNTAIQIALSCNFISPEPKGQLLLIDGKTEEEVGRSLERVLLTMRTTASEPKDVAFVVD GWALEIALKHYWKAFTELAILSRTAICCRVTPSQKAQLVQILKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGRFRFLKRLILVH GRYSYNRTAFLSQYSFYKSLLICFIQIFFSFISGVSGTSLFNSVSLMAYNVFYTSIPVLVSVLDKDLSEETVMQHPQILFYCQAGRLLNPSTFAGWFGRS LFHAIVVFVISIHAYAFEKSEMEEVGMVALSGCIWLQAFVVTLETNSFTILQHLAIWGNLIAFYVINWIVSAIPSSGMYTIMFRLCRQPSYWLTILLIVA AGMGPILAIKYFRYTYRPSKINTLQQAERLGGPILSLGNIEPPQQRLIEKEVAPLSITQSKNRNPVYEPLLSDSPSTRRSFGPGTPFDFFQSQSRLSSNY TRNCKDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Potri.017G013500 [exp]	0	1
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Potri.011G043600 [exp]	4.58	0.8111
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Potri.016G116600 [exp]	6.78	0.8302
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Potri.006G211700 [exp]	9.00	0.8083
AT4G19440			Tetratricopeptide repeat (TPR)...		Potri.003G105700 [exp]	9.79	0.8200
AT1G04210			Leucine-rich repeat protein ki...		Potri.008G158600 [exp]	12.40	0.8243
AT1G04140			Transducin family protein / WD...		Potri.002G254700 [exp]	12.48	0.7632
AT3G14400		UBP25	ubiquitin-specific protease 25...		Potri.001G394600 [exp]	16.49	0.7452
AT5G07980			dentin sialophosphoprotein-rel...		Potri.015G056400 [exp]	17.02	0.8162
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Potri.017G072460 [exp]	17.54	0.8027
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.007G071600 [exp]	18.49	0.8142

Compare expression of checked genes

Potri.017G013500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.