Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53970 528 / 0 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT5G36160 525 / 0 Tyrosine transaminase family protein (.1) AT2G20610 501 / 8e-177 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT4G28420 469 / 2e-164 Tyrosine transaminase family protein (.1.2) AT4G28410 464 / 2e-162 Tyrosine transaminase family protein (.1) AT2G24850 419 / 2e-144 TAT3 tyrosine aminotransferase 3 (.1) AT4G23590 367 / 1e-124 Tyrosine transaminase family protein (.1) AT4G23600 366 / 3e-124 JR2, CORI3, TAT1 JASMONIC ACID RESPONSIVE 2, CORONATINE INDUCED 1, Tyrosine transaminase family protein (.1.2.3) AT1G77670 93 / 2e-20 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G22250 92 / 3e-20 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G013800 [exp] 695 / 0 AT5G36160 520 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G014000 [exp] 694 / 0 AT5G53970 520 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013900 [exp] 692 / 0 AT5G53970 521 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014200 [exp] 619 / 0 AT5G36160 540 / 0.0 Tyrosine transaminase family protein (.1) Potri.007G137950 [exp] 555 / 0 AT5G53970 504 / 2e-178 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G137900 [exp] 543 / 0 AT5G53970 457 / 4e-160 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G138002 [exp] 258 / 3e-85 AT5G53970 226 / 5e-73 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.005G175400 [exp] 110 / 3e-26 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G086000 [exp] 103 / 5e-24 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018626 [exp] 642 / 0 AT2G20610 517 / 0.0 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10039861 [exp] 620 / 0 AT2G20610 509 / 1e-179 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10017704 [exp] 601 / 0 AT5G53970 508 / 4e-180 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10033661 [exp] 589 / 0 AT5G36160 499 / 1e-176 Tyrosine transaminase family protein (.1) Lus10017705 [exp] 587 / 0 AT5G53970 507 / 1e-179 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10033659 [exp] 561 / 0 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10017703 [exp] 560 / 0 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10017934 [exp] 511 / 0 AT5G53970 619 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10032654 [exp] 493 / 9e-175 AT5G53970 423 / 2e-147 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10013676 [exp] 494 / 3e-170 AT5G53970 617 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF01212 [poplar] [flax] Beta_elim_lyase Beta-eliminating lyase
Representative CDS sequence Show only first row Show all	>Potri.017G014100.1 pacid=42813201 polypeptide=Potri.017G014100.1.p locus=Potri.017G014100 ID=Potri.017G014100.1.v4.1 annot-version=v4.1 ATGGAAAACGGATCAAAGAAATGGGGTTTTCAAGCAAACAAGAGCCTCAGCACATCATCAGCAGTCACAGTCCGTGGAGTTCTTAATGTCTTACAGGACA ATCTCAACAAAGAAGATACAAGACAGGTCATGCCATTAGCCCATGGCGACCCTTCTGCTTTTCCTTGTTTTCGTACAACAACTGTGGCCGACGAGGCTGT TGTTGACGCTGTGAGATCTGCCAAGTACAACCATTATGCCCCAACTGTTGGTCTTCTTCCTGCTAGGAGGAGTGTTGCAGATTTCCTTAATCGTGATCTC CCGTACAAGTTATCACCAGATGATGTTTTTCTTACACTTGGTTGCACACAAGCAATTGAAATCACAATAACTGTACTTGCTCGACCTGGTGCCAACATTT TGCTTCCAAGACCTGGATTTCCATACTATGAAGCTCGGGCTGCACATAGTCATCTCGAAGCTCGCCATTTTGATCTTATCCCAGAAAAGGGCTGGGAGGT TGATCTTGATGCTGTTGAAGCTCTGGCAGATGAGAATACAGTTGCCATGGTTGTCATAAACCCTGGCAATCCTTGTGGAAGTGTCTACAGCTATCAACAT TTACAGAAGATCGCAGAGACAGCAAGAAAGCTTGGAATTATGGTGATTGCTGATGAAGTTTATGGCCATCTGACATTTGGGAATGCTCCATTTGTGCCAA TGGGAGTCTTTGGACCAATTGTGCCTGTCCTTACACTAGGGTCCATCTCAAAGAGATGGATTGTTCCTGGCTGGCGGATTGGTTGGCTTGTCACAAGTGA TCCTAATGGCATCCTTCAAGAATCTGGGGTTGTTGAATCAATCAAGGGATGTCTCAACATTTCCTCTGATCCTGTAACATTCATTCAGGGTGCAATTCCT CAAATCATTGACAACACGACAGAGGATTTCTTCACAAAAATCAATAACATACTGAGAGAGGCCGCAGACATATGCTATGAGAAAATCCAGGACATCCCTT GCATTACTTTGCCGCATAAACCAGAGGGTTCTATGTTTGTAATGGTAAAACTAAACCTATCTTCTTTGGAAGACATTGGTGATGATATGGACTTCTGTCT TAAGCTTGCTAAAGAGGAATCAGTCATGATACTCCCAGGGACTGCTGTGGGAATGAAGAATTTCCTTCGCATAACTTTTGCCATTGAGCCTTCGGCGCTT GAAGTTGGCCTCGAGAGGCTAAAGGCCTTTTATGAAAGGCATGCCAAGATACAATAA
AA sequence Show only first row Show all	>Potri.017G014100.1 pacid=42813201 polypeptide=Potri.017G014100.1.p locus=Potri.017G014100 ID=Potri.017G014100.1.v4.1 annot-version=v4.1 MENGSKKWGFQANKSLSTSSAVTVRGVLNVLQDNLNKEDTRQVMPLAHGDPSAFPCFRTTTVADEAVVDAVRSAKYNHYAPTVGLLPARRSVADFLNRDL PYKLSPDDVFLTLGCTQAIEITITVLARPGANILLPRPGFPYYEARAAHSHLEARHFDLIPEKGWEVDLDAVEALADENTVAMVVINPGNPCGSVYSYQH LQKIAETARKLGIMVIADEVYGHLTFGNAPFVPMGVFGPIVPVLTLGSISKRWIVPGWRIGWLVTSDPNGILQESGVVESIKGCLNISSDPVTFIQGAIP QIIDNTTEDFFTKINNILREAADICYEKIQDIPCITLPHKPEGSMFVMVKLNLSSLEDIGDDMDFCLKLAKEESVMILPGTAVGMKNFLRITFAIEPSAL EVGLERLKAFYERHAKIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Potri.017G014100 [exp]	0	1
AT2G22900			Galactosyl transferase GMA12/M...		Potri.014G006100 [exp]	1.73	0.8881	GT6.2
AT5G38530		TSBtype2	tryptophan synthase beta type ...		Potri.017G109600 [exp]	2.44	0.8826
AT2G22490		CYCD2;1, ATCYCD...	Cyclin D2;1 (.1.2)		Potri.001G292300 [exp]	4.24	0.8507
AT5G49900			Beta-glucosidase, GBA2 type fa...		Potri.004G227200 [exp]	5.65	0.8300
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.015G007600 [exp]	6.00	0.8683
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Potri.017G092500 [exp]	7.74	0.8041
AT5G12460			Protein of unknown function (D...		Potri.009G051600 [exp]	8.77	0.8593
AT5G04160			Nucleotide-sugar transporter f...		Potri.016G043200 [exp]	10.19	0.8772
AT5G22740		ATCSLA2, ATCSLA...	CELLULOSE SYNTHASE-LIKE A 2, A...		Potri.009G149700 [exp]	10.48	0.8727	ATCSLA02.1
AT5G22740		ATCSLA2, ATCSLA...	CELLULOSE SYNTHASE-LIKE A 2, A...		Potri.004G189000 [exp]	12.00	0.8187	Pt-ATCSLA02.2

Compare expression of checked genes

Potri.017G014100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.