Plant FIBer expression Database

Potri.017G014300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G28430 283 / 6e-91 Reticulon family protein (.1)
AT2G20590 281 / 9e-91 Reticulon family protein (.1.2)
AT5G58000 145 / 2e-38 Reticulon family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G137700
[exp]
551 / 0 AT2G20590 330 / 2e-109 Reticulon family protein (.1.2)
Potri.018G108200
[exp]
132 / 3e-33 AT5G58000 344 / 1e-110 Reticulon family protein (.1)
Potri.006G185700
[exp]
129 / 3e-32 AT5G58000 339 / 7e-109 Reticulon family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002173
[exp]
315 / 5e-105 AT2G20590 295 / 1e-97 Reticulon family protein (.1.2)
Lus10039890
[exp]
289 / 2e-94 AT2G20590 270 / 1e-87 Reticulon family protein (.1.2)
Lus10035829
[exp]
125 / 4e-31 AT5G58000 326 / 1e-105 Reticulon family protein (.1)
Lus10036611
[exp]
121 / 1e-29 AT5G58000 325 / 4e-105 Reticulon family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0484 Peroxisome PF02453 Reticulon Reticulon
Representative CDS sequence
>Potri.017G014300.1 pacid=42813265 polypeptide=Potri.017G014300.1.p locus=Potri.017G014300 ID=Potri.017G014300.1.v4.1 annot-version=v4.1
ATGGATACAACACCACCTTCTCATAGGTCAAACCCCAACTCTCAAGCAAAATCAGCCTCTCGTTTGTCAAGAATCACATACTCTATCGAACCAGAAGCAA
AGCCTCCACAGCTGTCTCTAGACCTTATCCCTTCGTCGGAAAAGAAAACCCCATCAAGTCTTTCACTCAAATCCTCAACCAACTCTCTCCCTCTTCAAGA
ACAACTCCTCCTCTTTCCTTCTCCTTTGAGAAAATCAAGAAACCGTCTTGTCGACCGGTATGAGATGCCGGAGGAGGGTGTTTTAGAGAAAAATGGGTCT
AGAAGGAGATGCAAAAGTAGAGGATCTCAGATGGGTTCTTTAGGTTGTGCTTCACCAAGGAGTAATAGAAGGTTAAGGAGAAGATTGGAGGTGGAGAGTA
TGGAAGAAAGGGACTTGATTGGTTTTGTGGATGAGGTTGGAAAAGTGAGAAAGAGGAGACATAGCGGCCGGTCTAAGAAGGAGAAGGAGAAGGAGAAGCT
CTCTTTAGTCCCTTCATTGCCTTCTTCTAGCACCACTCCAAAAGTTGATGAAGGTGATGGAGTCAATTTGGAGAGGATTGGGATGGTTGTTTATAATCTG
ATAATGTGGAAAGATGTGGCAAAATCAAGTCTTTGGTTTGGTCTTGGATGCCTATGTTTCTTGTCTTCCTGCTTTGCTAAAGGGATTAGCTTTAGCATTT
TCTCTGCCATTTCACAACTCGGGCTTCTGTTTTTGGGTGTATCATTCCTCTCGAATTCGATATGTCAAAGAAACAGTGTTGAGAAGCTGAGAAAATTTAA
GCTGACAGAAGAGGACATTTTGAGAGTGGGTAGATTGATACTTCCAGCTGCAAATCTTGCAATTTTAAAGACAAGAGATTTATTCTCAGGAGAGCCATCC
ATGACCCTCAAAGTGATTCCTTTCTTGCTTCTTGGTGCGGAGTATGGTCATCTTGTAACTTTGAGGAGGCTTTGTGGAATTGGGTTTTTCATTAGCTTCA
CCATACCAAAACTATTTGCTTGCTATTCTAGTCAGATTAACCAGAAAGTTGAGCACTTGAAATGCCGGATGATGGAAGCATGGAGAGCTTGTTTTCACAA
AAAGATGGTGGCAGCATCAGCAGTCACAGCTTTCTGGAATCTGTCAAGTGTCAAAACCCGTATATTTACTGCATTTATATCTTTGGTAATACTACGATGC
TGCCGGCAACAACTAATGCCAAGCCAGGAAGAAGGCGGGTTACAGCCAACACAAGTAGAAGGGGAAGCAGAAGGAGAACAAGAGCCAAAACAGGCAGGAG
TGGCCTCCCTAAATCAGTAG
AA sequence
>Potri.017G014300.1 pacid=42813265 polypeptide=Potri.017G014300.1.p locus=Potri.017G014300 ID=Potri.017G014300.1.v4.1 annot-version=v4.1
MDTTPPSHRSNPNSQAKSASRLSRITYSIEPEAKPPQLSLDLIPSSEKKTPSSLSLKSSTNSLPLQEQLLLFPSPLRKSRNRLVDRYEMPEEGVLEKNGS
RRRCKSRGSQMGSLGCASPRSNRRLRRRLEVESMEERDLIGFVDEVGKVRKRRHSGRSKKEKEKEKLSLVPSLPSSSTTPKVDEGDGVNLERIGMVVYNL
IMWKDVAKSSLWFGLGCLCFLSSCFAKGISFSIFSAISQLGLLFLGVSFLSNSICQRNSVEKLRKFKLTEEDILRVGRLILPAANLAILKTRDLFSGEPS
MTLKVIPFLLLGAEYGHLVTLRRLCGIGFFISFTIPKLFACYSSQINQKVEHLKCRMMEAWRACFHKKMVAASAVTAFWNLSSVKTRIFTAFISLVILRC
CRQQLMPSQEEGGLQPTQVEGEAEGEQEPKQAGVASLNQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G28430 Reticulon family protein (.1) Potri.017G014300
[exp]
0 1
AT3G05330 ATN ,ATTAN A. THALIANA TAN1, TANGLED, cyc... Potri.013G022600
[exp]
2.23 0.9713
Potri.006G190400
[exp]
2.44 0.9796
AT5G12930 unknown protein Potri.001G017100
[exp]
2.44 0.9749
AT4G02800 unknown protein Potri.002G053100
[exp]
5.29 0.9761
AT1G44110 CYCA1;1 Cyclin A1;1 (.1) Potri.002G080000
[exp]
6.48 0.9706
AT2G20590 Reticulon family protein (.1.2... Potri.007G137700
[exp]
7.21 0.9717
Potri.001G407200
[exp]
7.93 0.9704
AT1G13890 ATSNAP30, SNAP3... soluble N-ethylmaleimide-sensi... Potri.008G093800
[exp]
8.83 0.9708 SNAP30.2
AT3G51740 IMK2 inflorescence meristem recepto... Potri.006G104300
[exp]
10.81 0.9500 Pt-RHG1.3
AT5G06150 CYC1BAT, CYCB1;... cyclin B 1;2, Cyclin family pr... Potri.006G035200
[exp]
11.83 0.9703

Potri.017G014300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.