Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44200 331 / 2e-115 ATCBP20, CBP20 CAP-binding protein 20 (.1.2) AT3G10400 57 / 2e-09 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT1G66260 55 / 1e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G27330 52 / 2e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G46020 50 / 4e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G47120 52 / 1e-07 C3HZnF RNA recognition motif (RRM)-containing protein (.1) AT5G37720 52 / 1e-07 DIP2, ALY4 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) AT2G18510 51 / 2e-07 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G59950 50 / 3e-07 RNA-binding (RRM/RBD/RNP motifs) family protein AT1G16610 50 / 5e-07 RNPS1, SR45 arginine/serine-rich 45 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G137400 [exp] 426 / 6e-153 AT5G44200 327 / 9e-114 CAP-binding protein 20 (.1.2) Potri.009G160300 [exp] 56 / 4e-10 AT2G27330 98 / 1e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G087000 [exp] 54 / 2e-08 AT5G37720 213 / 2e-68 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Potri.012G038200 [exp] 52 / 6e-08 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G028300 [exp] 52 / 2e-07 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G143100 [exp] 51 / 2e-07 AT1G16610 169 / 3e-48 arginine/serine-rich 45 (.1.2.3) Potri.005G125300 [exp] 51 / 3e-07 AT2G18510 412 / 3e-144 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.016G093944 [exp] 50 / 4e-07 AT5G59950 196 / 1e-62 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.002G124200 [exp] 50 / 5e-07 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017682 [exp] 353 / 6e-124 AT5G44200 358 / 9e-126 CAP-binding protein 20 (.1.2) Lus10039887 [exp] 321 / 3e-111 AT5G44200 332 / 1e-115 CAP-binding protein 20 (.1.2) Lus10033636 [exp] 285 / 1e-97 AT5G44200 298 / 1e-102 CAP-binding protein 20 (.1.2) Lus10019838 [exp] 61 / 1e-10 AT1G49760 192 / 3e-55 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Lus10002835 [exp] 57 / 3e-09 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 57 / 3e-09 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10024413 [exp] 54 / 2e-08 AT5G59950 219 / 1e-71 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10025329 [exp] 54 / 3e-08 AT5G59950 224 / 2e-73 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10041728 [exp] 54 / 4e-08 AT2G18510 436 / 1e-153 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10024024 [exp] 52 / 1e-07 AT2G18510 275 / 5e-92 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.017G014600.1 pacid=42814182 polypeptide=Potri.017G014600.1.p locus=Potri.017G014600 ID=Potri.017G014600.1.v4.1 annot-version=v4.1 ATGGCTTCCCTCTTCAAGGATCTAACAAAGCTATCAGCTTATAGAGACAGGAGGTTTCCTGGTAATCAAGAAGAGTTTGAACAGGCACTTCAAACCTCAA CAACTGTCTACATTGGTAACATGTCTTTTTATTCTACTGAAGAGCAAGTTTATGAGCTTTTCTCTCGAGCTGGAGAGATTAAGAAGATAATCATGGGTTT GGATAAGAACAGTAAAACCCCATGTGGGTTTTGTTTTGTCTTATATTACTCTAGAGAAGACACAGAGGATGCGGTGAAGTTTATGAGTGGAACCATTCTT GATGATCGTCCAATTCGTGTGGATTTTGATTGGGGTTTTCAGGAAGGAAGGCAATGGGGTCGTGGTCGAAGTGGTGGACAGGTGCGAGATGAATATCGGA CAGACTACGATCCTGGCAGAGGTGGTTATGGAAAATTAGTTCAGCAAGAGTTGGAAGCACAAAGACAGCTTGTAGATTATGGTACTGGGTCCTTGGGTTC TTTCCCTCCAGTTATGCCACCACCTCATTATGGCAGACGTGGTGGAATCCACAATCACGGTGGTTCTCTTCGCCAGAGTGGAGATTACCATCACCGGAAG CGGCACAGAGAGGATGACCGACCTCCACGCGAATCTTCAAAGAGAACCTCAGATCATGAGTCCAGGAGGAACTTTGATCCCGACTCACGACCGGAGAAGA ATCCACGATTCCGTGAAAGTGCCAACTCTGATGATGAAGAGGAAGATGATAAGCAGCAACGAACTTAA
AA sequence Show only first row Show all	>Potri.017G014600.1 pacid=42814182 polypeptide=Potri.017G014600.1.p locus=Potri.017G014600 ID=Potri.017G014600.1.v4.1 annot-version=v4.1 MASLFKDLTKLSAYRDRRFPGNQEEFEQALQTSTTVYIGNMSFYSTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFMSGTIL DDRPIRVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQQELEAQRQLVDYGTGSLGSFPPVMPPPHYGRRGGIHNHGGSLRQSGDYHHRK RHREDDRPPRESSKRTSDHESRRNFDPDSRPEKNPRFRESANSDDEEEDDKQQRT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Potri.017G014600 [exp]	0	1
AT3G08980			Peptidase S24/S26A/S26B/S26C f...		Potri.016G115100 [exp]	2.00	0.8875
AT1G02140		MAGO, HAP1, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.014G049700 [exp]	9.48	0.8387
AT3G26782			Tetratricopeptide repeat (TPR)...		Potri.001G322100 [exp]	13.85	0.8606
AT2G36730			Pentatricopeptide repeat (PPR)...		Potri.017G083900 [exp]	16.52	0.8606
AT1G03150			Acyl-CoA N-acyltransferases (N...		Potri.002G052000 [exp]	19.59	0.8713
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Potri.008G076900 [exp]	23.23	0.8630
AT3G11591			unknown protein		Potri.008G011620 [exp]	23.91	0.8577
AT5G06770	C3HZnF		KH domain-containing protein /...		Potri.016G046600 [exp]	27.92	0.8146
AT4G32090			Beta-1,3-N-Acetylglucosaminylt...		Potri.004G167900 [exp]	28.61	0.7844
AT1G14685	BBR_BPC	BBR/BPC2, ATBPC...	basic pentacysteine 2 (.1.2.3)		Potri.015G032800 [exp]	31.32	0.8586	GBP.2

Compare expression of checked genes

Potri.017G014600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.