Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28450 798 / 0 nucleotide binding;protein binding (.1) AT4G02730 70 / 6e-13 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 67 / 7e-12 WD-40 repeat family protein / notchless protein, putative (.1) AT2G21390 67 / 2e-11 Coatomer, alpha subunit (.1) AT1G62020 66 / 4e-11 Coatomer, alpha subunit (.1) AT3G49660 62 / 2e-10 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 62 / 2e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 62 / 6e-10 TAF5 TBP-associated factor 5 (.1) AT4G35050 60 / 1e-09 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT5G54520 60 / 2e-09 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G137300 [exp] 925 / 0 AT4G28450 794 / 0.0 nucleotide binding;protein binding (.1) Potri.002G051900 [exp] 74 / 3e-14 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G019833 [exp] 70 / 1e-12 AT4G18905 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G019601 [exp] 70 / 1e-12 AT4G18905 566 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G069700 [exp] 69 / 5e-12 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.012G074800 [exp] 68 / 9e-12 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.018G020200 [exp] 65 / 7e-11 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.005G148500 [exp] 64 / 7e-11 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 64 / 1e-10 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037378 [exp] 781 / 0 AT4G28450 733 / 0.0 nucleotide binding;protein binding (.1) Lus10015673 [exp] 240 / 2e-76 AT4G28450 221 / 3e-69 nucleotide binding;protein binding (.1) Lus10037684 [exp] 201 / 4e-56 AT3G14120 1545 / 0.0 unknown protein Lus10014674 [exp] 69 / 2e-12 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 68 / 3e-12 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10037538 [exp] 68 / 8e-12 AT2G21390 1402 / 0.0 Coatomer, alpha subunit (.1) Lus10005074 [exp] 66 / 2e-11 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10016481 [exp] 66 / 5e-11 AT1G62020 2130 / 0.0 Coatomer, alpha subunit (.1) Lus10040752 [exp] 66 / 5e-11 AT1G62020 2133 / 0.0 Coatomer, alpha subunit (.1) Lus10027848 [exp] 64 / 8e-11 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF04158 [poplar] [flax] Sof1 Sof1-like domain CL0186 [poplar] [flax] Beta_propeller PF08662 [poplar] [flax] eIF2A Eukaryotic translation initiation factor eIF2A
Representative CDS sequence Show only first row Show all	>Potri.017G014700.1 pacid=42813495 polypeptide=Potri.017G014700.1.p locus=Potri.017G014700 ID=Potri.017G014700.1.v4.1 annot-version=v4.1 ATGAAAGTGAAAGTAATTTCACGATCTACCGATGAATTCACTCGAGAACGTAGCCAAGATCTCCAAAGAGTGTTTCACAATTTTGATCCGAATCTAAGAA CACAAGAGAAGGCGGTGGAGTACCAGAGGGCACTTAATGCTGCCAAATTAGATAAGATATTTGCAAGGCCGTTTATTGGAGCGATGGACGGTCATATTGA TGCAGTTTCGTGTATGGCGAAAAATCCGAATTACTTGAAAGGGATATTTTCTGGTTCTATGGATGGAGATATTCGCCTTTGGGATATAGCTAATAGGAGA ACAGTTTGTCAATTTCCTGGTCACCAGGGTGCTGTAAGAGGTTTGACTGCCTCTACAGATGGGAGTACTCTTGTATCTTGTGGAACTGATTGCACTGTCA GGCTCTGGAATGTTCCTGTAGCTACTATTATGGATTCAGACAACTTGTCTGACTGTTCATCTGAGCCACGGGCAGTTTATATGGGGGAAAATGCATTTTG GGCTGTTGACCACCAATGGAATGGTGATCTCTTTGCCACTGCTGGTGCTCAAGTAGATATTTGGAATCATAATAGGTCTCAACCAGTGAACAGCTTTAAG TGGGGAACAGACTCAGTTATTTCTGTCCGATTTAATCCAGGGGAACCAAATCTCTTGGTAACATCAGCAAGTGATCGCAGCATAATATTGTATGACTTGC GTGTGTCATCTCCAGCAAGGAAACTTATTATGAGGACAAAAACTAATTCTATTTCTTGGAACCCAATGGAACCCATGAACTTCACAGCTGCAAATGAGGA TTGCAACTGCTATAGCTATGATGCCAGAAAATTGGAAGAAGCCAAGTGTGTGCACAAAGATCACGTTTCTGCAGTGATGGATATTGATTTCTCGCCAACG GGTCGGGAATTCGTAACTGGATCCTATGATAGAACAGTTAGAATTTTCCAGTATAATGGAGGTCACAGTCGGGAAATCTATCACACAAAGAGAATGCAAA GGGTATTCTGTGTCAAGTTCAGCTGCGACGCAAGCTATGTTATTTCAGGAAGCGATGACACAAATCTGAGGTTATGGAAAGCTAAAGCATCAGAACAATT GGGAGTTCTACTACCAAGGGAACAGAAAAGGCATGAATACAACGAAGCGCTAAAGAATCGCTACAAGCACCTTCCTGAGGTCAAGCGCATTGTGAGGCAT AGGCATTTGCCCAAACCTATATACAAGGCTGGTGTCCTTCGCCGTGTAATGATTGAAGCTGAAAGGAGGAAAGATCAAAGGAGGAAAGCTCACAGTGCCC CGGGAAGCATTGTAACTGAACCAATGCGAAAAAGAAGAATTATTAAAGAAGTTGATTGA
AA sequence Show only first row Show all	>Potri.017G014700.1 pacid=42813495 polypeptide=Potri.017G014700.1.p locus=Potri.017G014700 ID=Potri.017G014700.1.v4.1 annot-version=v4.1 MKVKVISRSTDEFTRERSQDLQRVFHNFDPNLRTQEKAVEYQRALNAAKLDKIFARPFIGAMDGHIDAVSCMAKNPNYLKGIFSGSMDGDIRLWDIANRR TVCQFPGHQGAVRGLTASTDGSTLVSCGTDCTVRLWNVPVATIMDSDNLSDCSSEPRAVYMGENAFWAVDHQWNGDLFATAGAQVDIWNHNRSQPVNSFK WGTDSVISVRFNPGEPNLLVTSASDRSIILYDLRVSSPARKLIMRTKTNSISWNPMEPMNFTAANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPT GREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLLPREQKRHEYNEALKNRYKHLPEVKRIVRH RHLPKPIYKAGVLRRVMIEAERRKDQRRKAHSAPGSIVTEPMRKRRIIKEVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28450			nucleotide binding;protein bin...		Potri.017G014700 [exp]	0	1
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Potri.014G129700 [exp]	3.31	0.8368
AT3G51790		ATG1	transmembrane protein G1P-rela...		Potri.003G205200 [exp]	3.87	0.7849
AT5G54910			DEA(D/H)-box RNA helicase fami...		Potri.001G423300 [exp]	9.38	0.8249
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Potri.014G135600 [exp]	15.96	0.7932
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Potri.008G084700 [exp]	19.59	0.7879
AT1G14060			GCK domain-containing protein ...		Potri.013G109100 [exp]	20.90	0.7384
AT1G31660			unknown protein		Potri.011G112500 [exp]	22.18	0.7837
AT1G03360		ATRRP4	ribosomal RNA processing 4 (.1...		Potri.003G194400 [exp]	23.36	0.7247
AT3G53940			Mitochondrial substrate carrie...		Potri.006G091900 [exp]	24.00	0.7726
AT5G41190			unknown protein		Potri.003G124700 [exp]	28.28	0.7607

Compare expression of checked genes

Potri.017G014700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.