Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20580 1399 / 0 RPN1A, AtRPN1a 26S proteasome regulatory subunit S2 1A (.1) AT4G28470 1370 / 0 RPN1B, AtRPN1b 26S proteasome regulatory subunit S2 1B (.1) AT4G08140 109 / 1e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G137200 [exp] 1533 / 0 AT2G20580 1358 / 0.0 26S proteasome regulatory subunit S2 1A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039885 [exp] 1441 / 0 AT2G20580 1488 / 0.0 26S proteasome regulatory subunit S2 1A (.1) Lus10002169 [exp] 1432 / 0 AT2G20580 1476 / 0.0 26S proteasome regulatory subunit S2 1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01851 [poplar] [flax] PC_rep Proteasome/cyclosome repeat
Representative CDS sequence Show only first row Show all	>Potri.017G014800.1 pacid=42813721 polypeptide=Potri.017G014800.1.p locus=Potri.017G014800 ID=Potri.017G014800.1.v4.1 annot-version=v4.1 ATGGCTCCGGACCTGAACAAGGCGAGCGGCGGCAGCGGCGCATCCAAAAACGAGGCGCCGGTGAAGGCGCCGCCGTCGAAGAAGAAAGAAGAGAAGAAAG ATGAGGATTTATCAGAGGAGGACTTGGCATTGAAGCAGCAATTAGAGTTGTATGTGGAAAGAGTTCAAGATCCTGAACCTGGGATTCAAAAGCTCGCTCT CGAGAGCTTGAGACAGGAAATTCGAAGCTCAACAAGCTCGATGACTTCAGTTCCAAAGCCATTGAAGTTTCTTCGAGCACATTATGGAACCTTAAAAGCA CATTATGAAAACATGGCTGAGTCTGATCTGAAGAAATACTTGGCAGATATACTCTCAGTCTTGGCGCTCACCATGTCTGCCGAGGGAGAACGGGAAAGCT TAAAATACAGATTGTTGGGTTCAGAGGGTGATATTGGTTCATGGGGACATGAGTATGTAAGGAACTTGGCTGGAGAAATTGCTCAAGAGCATACAAAGCG ACAGACTGAAGAGGCCTCGGTTCATGATTTGATTGAGCTTGTACAACAGATTGTTGCTTTTCACATGAAGCACAATGCTGAACCCGAAGCTGTGGACCTA TTAATGGAGGTTGAAGATCTTAATATTTTAAGTAAGCATGTGGATAAAACAAATTTCAAGAGGACTTGTCTCTACCTCACCAGTGCAGCAAAATACCTTC CTGGACCAGATGATTTGGCAGTTCTTAAAATAGCATATGAGATATATCTCAAATTTGGAGAATATGCTAGTGCACTTCAGATTGCATTGTTCCTCGATAA CTCGCAGTATATCAAGCAGGTTTATATATCTTGTGATGATCTGCTGCAAAAGAAACAATTTTCTTACATCCTTGCTCGACATGGCACTGCTTTTGAGCTT GATGATGATATATCTGCAGATGATGTGGACAGGGAAGTATTGGAGGAAATAATCAACAACACCAAATTGACTGAGGGTTATCTTACCCTTGCCCGTGACA TTGAGGTCATGGAGCCCAAATCTCCTGAAGACATCTATAAGGCACACTTGCTTGATGGTCGTGCTAGTGCTGGTGCTAGTGTTGATTCAGCCAGACAGAA TTTGGCTGCTACATTTGTTAATGCATTTTTAAATGCAGGATTTGGACAGGATAAGTTAATGACACCTCCAACAGACTCTTCAAGTGGTGGTTCAGGAAAT TGGCTTTTCAAGAATAAAGATCACGGGAAGACCAGCGCTGCAGCAAGCCTGGGTATGATTTTAATGTGGGATGTGGACTCTGGGCTCGCTCAACTTGATA AGTATTTCCACAGCAATGACAATCATGTGATTGCCGGTGCACTACTAGGGGTTGGAATTGTCAACTGTGGTATCAGAAATGACTGTGATCCTGCACTGGC ACTTCTTGATGATTTTGTTGATAAAGAAGATCCATCTATCCGAATTGGTGCTATAATGGGGTTGGGAATTGCATATGCTGGTACTCAGAATGAGCAGATA TGCAGTAAATTGTCCGGGATACTTAGTGATGCAAAAGCTCCACTTGATGTAATAGCATTTTCTGCAATCTCATTGGGCTTGGTTTGCGTTTCTTCGTGCA ATGAAGAGGTTGCACAGGCTATTATACTTGCATTAATGGACAGGAGCGAGTCAGAATTGCAGGAGCCCCTTATTCGATTTTTGCCTCTTGGCCTTGGTCT CCTATATCTTGGGAAGCAGGAAAGAGTGGATGCCACTGCAGAAGTGTCGAAGACATTTAATGAGAAAATAAGAAAGTATTGTGATATGACACTGCTTTCC TGTGCCTATGCCGGGACTGGGAATGTTCTTAAGGTTCAAAACCTTCTGGGTCATTGTGCTGAACACCTTGAGAAAAGTGAAACTCACCAGGGACCTGCTG TGCTTGGGATTGCTATGATAGCAATGGCTGAGGAATTGGGCCTCGAAATGGCAATTCGCTCGTTGGAACATCTGTTGCAATATGGGGAGCAGAATATTCG TAGAGCAGTTCCTTTGGCCCTTGGACTCCTCTGTATTTCAAATCCTAAGGTTAATGTTATGGACACATTAAGTAGACTCAGCCATGATACAGATTCAGAA GTTGCAATGGCTGCAGTTTTTTCCTTAGGTTTGATAGGTGCTGGAACTAACAATGCTCGCATAGCTGGAATGCTTCGCAATCTTTCCAGCTATTATTACA AAGATGCCACCCTTCTTTTCTGTGTGCGAATTGCCCAAGGTCTCGTACACTTGGGGAAGGGCCTGCTGACCATCAATCCATATCACTCTGATCGCTTCTT ACTATCACCCACCGCGCTTGCTGGTCTAATAACCATGCTTCATGCATGTCTTGATATGAAGGCCATCATTTTGGGGAAATATCACTATGTCCTCTATTTC CTTGTTTTAGCAATGCAGCCAAGAATGTTGTTGACAGTGGATGAGAATCTCAAGCCTTTATCTGTACCTGTTCGAGTGGGACAAGCAGTTGATGTTGTTG GTCAAGCTGGAAGACCCAAGACCATTACTGGTTTCCAGACCCACTCAACGCCAGTTCTTCTGGCTGCTGGTGATCGGGCTGAATTGGCTACCGAGAAGTA TATTCCCCTCTCACCCATTCTTGAAGGGTTTGTCATATTGAAGGAGAACCCAGATTACAGAGAAGATCTGTAG
AA sequence Show only first row Show all	>Potri.017G014800.1 pacid=42813721 polypeptide=Potri.017G014800.1.p locus=Potri.017G014800 ID=Potri.017G014800.1.v4.1 annot-version=v4.1 MAPDLNKASGGSGASKNEAPVKAPPSKKKEEKKDEDLSEEDLALKQQLELYVERVQDPEPGIQKLALESLRQEIRSSTSSMTSVPKPLKFLRAHYGTLKA HYENMAESDLKKYLADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEHTKRQTEEASVHDLIELVQQIVAFHMKHNAEPEAVDL LMEVEDLNILSKHVDKTNFKRTCLYLTSAAKYLPGPDDLAVLKIAYEIYLKFGEYASALQIALFLDNSQYIKQVYISCDDLLQKKQFSYILARHGTAFEL DDDISADDVDREVLEEIINNTKLTEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFLNAGFGQDKLMTPPTDSSSGGSGN WLFKNKDHGKTSAAASLGMILMWDVDSGLAQLDKYFHSNDNHVIAGALLGVGIVNCGIRNDCDPALALLDDFVDKEDPSIRIGAIMGLGIAYAGTQNEQI CSKLSGILSDAKAPLDVIAFSAISLGLVCVSSCNEEVAQAIILALMDRSESELQEPLIRFLPLGLGLLYLGKQERVDATAEVSKTFNEKIRKYCDMTLLS CAYAGTGNVLKVQNLLGHCAEHLEKSETHQGPAVLGIAMIAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSE VAMAAVFSLGLIGAGTNNARIAGMLRNLSSYYYKDATLLFCVRIAQGLVHLGKGLLTINPYHSDRFLLSPTALAGLITMLHACLDMKAIILGKYHYVLYF LVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENPDYREDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Potri.017G014800 [exp]	0	1
AT5G43960			Nuclear transport factor 2 (NT...		Potri.002G257000 [exp]	2.64	0.7936
AT2G32730			26S proteasome regulatory comp...		Potri.001G314300 [exp]	3.60	0.7075
AT2G32730			26S proteasome regulatory comp...		Potri.017G054400 [exp]	14.42	0.6899
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Potri.018G017600 [exp]	14.62	0.7729
AT3G63460		EMB2221	transducin family protein / WD...		Potri.009G055400 [exp]	18.97	0.7360
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.007G065600 [exp]	19.62	0.7266	Pt-LOS1.2
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Potri.006G265300 [exp]	21.63	0.7109
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Potri.002G252900 [exp]	22.36	0.7474	Pt-CPN60.2
AT1G18070			Translation elongation factor ...		Potri.019G062500 [exp]	24.91	0.7583
AT4G18030			S-adenosyl-L-methionine-depend...		Potri.001G146400 [exp]	28.14	0.6923

Compare expression of checked genes

Potri.017G014800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.