Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14460 124 / 2e-29 LRR and NB-ARC domains-containing disease resistance protein (.1) AT4G16890 64 / 3e-10 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 60 / 4e-09 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G17680 59 / 6e-09 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G51560 57 / 4e-08 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G08450 56 / 8e-08 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16950 52 / 1e-06 RPP5 RECOGNITION OF PERONOSPORA PARASITICA 5, Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT3G44630 51 / 2e-06 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT3G44480 50 / 3e-06 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G40100 50 / 5e-06 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G015200 [exp] 578 / 0 AT3G14470 559 / 5e-178 NB-ARC domain-containing disease resistance protein (.1) Potri.017G015600 [exp] 510 / 3e-167 AT3G14470 591 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G015300 [exp] 498 / 4e-162 AT3G14470 572 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.007G137101 [exp] 337 / 5e-103 AT3G14470 616 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G029300 [exp] 198 / 4e-54 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200200 [exp] 195 / 2e-53 AT3G14470 634 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.005G007001 [exp] 189 / 3e-51 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126806 [exp] 188 / 5e-51 AT3G14470 587 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126706 [exp] 186 / 4e-50 AT3G14470 565 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039509 [exp] 178 / 3e-47 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 176 / 1e-46 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002737 [exp] 163 / 9e-44 AT3G14460 167 / 7e-44 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 166 / 3e-43 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 154 / 3e-39 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026132 [exp] 127 / 1e-30 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 98 / 7e-21 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 96 / 2e-20 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10001366 [exp] 77 / 2e-14 AT5G36930 424 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039548 [exp] 72 / 2e-13 AT3G14460 164 / 6e-44 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G015000.1 pacid=42814457 polypeptide=Potri.017G015000.1.p locus=Potri.017G015000 ID=Potri.017G015000.1.v4.1 annot-version=v4.1 ATGGAGCAAATGAGTCATTTGGATCCCTCTTCTTTCACTGAAATCAAAATCGAGGAATGTAGTTCATTTAAGCGCTGCCAGCTAGACCTTTTACCCCGGG TATCCACACTTACCATCGAACACTGTCCCAATCTCGAATCCCTTTGTATAGGCGAGGGACCTCTCCCTGCTCTCTGTCATCTGACAATCAGTCACTGTCC TAATTTGGTGTCTTTCCCCAAAGGAGGACTAGCTGCCTCAGATTTGACAAGGCTTGTGTTAGAGGGTTGCTCATATTTGAAGTCGTTGCCGGAAAACATG CATTCCCTCCTCCCTTCCCTACAGAATTTGCAATTGATCTCACTTCCAGAAGTTGATTCGTTTCCTGAAGGAGGTTTACCCTCCAAATTACACACACTTT GCATTGAAGATTGTATCAAACTCAAGGTATGTGGTTTGCAAGCACTCCCTTCTCTTTCATGCTTCATATTTACTGGGAACGATGTGGAGTCTTTTGACGA GGAGACGTTGCCCTCTACTCTTACAACCCTTGTAATCAATCGTCTGGGAAACCTGAAGTCTCTGGACTATAAGGGGCTTCATCACCTCACCTCTCTTCAG GTATTGGGTATCGAGGGTTGCCATAAGCTTGAGTCCATATCAGAGCAAGCGCTTCCCTCCTCCCTTGAAAACCTTGATCTCAGAAATCTAGAATCTCTGG ACTACATGGGGCTTCATCACCTCACATCTCTTCAGAGATTGTATATCGCGGGCTGCCCTAAGCTTGAGTCCATATCAGAGCTGGCGCTTCCCTCTTCCCT TAAATACCTTTATCTCAGAAATCTAGAATCTCTGGACTACAAGGGGCTTCATCACCTCACCTCTCTTTACACATTGAAGATCAAGAGTTGCCCTAAAGTT GAGTTCATATCAGAACAGGTGCTGCCCTCCTCCCGTGAATACCAGGGGCTTCATCACCTTACTTCTCTTACAAATTTGAGTATCAAGAGTTACCCTAAAC TTGAGTCCATATCAGAACGGGCGCTGCCCTCCTCCCTTGAATACCTTCATCTCTGTAAACTGGAATCTCTGGACTACATTGGGCTTCAGCACCTCACCTC TCTTCACAAATTGAAGATCGGGAGTTGTCCTAAACTTGAATCGTTGCAGTGGCTGCCTTCCTCCCTTGAATTCCTTCAGTTATGGGATCAGCAAGACCGG GACTACAAGGAGCTTCGGCACCTCACCTCTCTTCGCAAAATGAAGATAAGGAGGAGCCTTAAGCTTGAGTCCTTTCAAGAAGGCACACTTCCCTCCTCCC TTGAAGACCTTGAAATCTGGGATTTGGAAGATCTGGAATTTAAGGGGTTTCGGCACCTCACCTCTCTTCGTGAATTACATATCTGTAGTTCTCCTAAGCT CGAGTCCGTGCCAGGAGAGAAGCTGCCCTCCTCCCTTGTATCTCTTCAAATATCAGGTCTGATAAATCTGAAATCTGTAATGGGGCTTCAGCACCTCACC TCTCTTCGCAAATTGATTATCTCGGATTGTCCTCAGCTCGAGTCCGTGCCAAGAGAATGGCTGCCCCTTTTCCGATATGATGATATTAGACGTTGTCCTA AACTTAATTTGGTTATAGGAGACGGTCTCACTATACCATTTTCCTAG
AA sequence Show only first row Show all	>Potri.017G015000.1 pacid=42814457 polypeptide=Potri.017G015000.1.p locus=Potri.017G015000 ID=Potri.017G015000.1.v4.1 annot-version=v4.1 MEQMSHLDPSSFTEIKIEECSSFKRCQLDLLPRVSTLTIEHCPNLESLCIGEGPLPALCHLTISHCPNLVSFPKGGLAASDLTRLVLEGCSYLKSLPENM HSLLPSLQNLQLISLPEVDSFPEGGLPSKLHTLCIEDCIKLKVCGLQALPSLSCFIFTGNDVESFDEETLPSTLTTLVINRLGNLKSLDYKGLHHLTSLQ VLGIEGCHKLESISEQALPSSLENLDLRNLESLDYMGLHHLTSLQRLYIAGCPKLESISELALPSSLKYLYLRNLESLDYKGLHHLTSLYTLKIKSCPKV EFISEQVLPSSREYQGLHHLTSLTNLSIKSYPKLESISERALPSSLEYLHLCKLESLDYIGLQHLTSLHKLKIGSCPKLESLQWLPSSLEFLQLWDQQDR DYKELRHLTSLRKMKIRRSLKLESFQEGTLPSSLEDLEIWDLEDLEFKGFRHLTSLRELHICSSPKLESVPGEKLPSSLVSLQISGLINLKSVMGLQHLT SLRKLIISDCPQLESVPREWLPLFRYDDIRRCPKLNLVIGDGLTIPFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14460			LRR and NB-ARC domains-contain...		Potri.017G015000 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.003G200080 [exp]	3.00	0.9474
AT5G36930			Disease resistance protein (TI...		Potri.019G021024 [exp]	4.00	0.9469
AT3G14470			NB-ARC domain-containing disea...		Potri.003G200500 [exp]	6.48	0.9285
AT1G15780			unknown protein		Potri.003G013000 [exp]	8.71	0.8946
AT5G48890	C2H2ZnF	LATE	LATE FLOWERING, C2H2-like zinc...		Potri.014G178200 [exp]	10.00	0.8314
AT3G14470			NB-ARC domain-containing disea...		Potri.017G014900 [exp]	10.58	0.9251
AT3G14470			NB-ARC domain-containing disea...		Potri.017G015200 [exp]	11.61	0.8149
AT5G36930			Disease resistance protein (TI...		Potri.019G017082 [exp]	12.48	0.9167
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Potri.010G122932 [exp]	12.64	0.8992
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Potri.004G193300 [exp]	12.72	0.8979

Compare expression of checked genes

Potri.017G015000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.