Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 285 / 4e-86 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 286 / 5e-85 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G58390 70 / 2e-12 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58400 64 / 2e-10 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G69550 56 / 6e-08 disease resistance protein (TIR-NBS-LRR class) (.1) AT3G07040 55 / 1e-07 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT5G43470 54 / 2e-07 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59218 53 / 4e-07 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 53 / 4e-07 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G45500 53 / 4e-07 RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G015200 [exp] 743 / 0 AT3G14470 559 / 5e-178 NB-ARC domain-containing disease resistance protein (.1) Potri.017G015600 [exp] 721 / 0 AT3G14470 591 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G015300 [exp] 703 / 0 AT3G14470 572 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G014900 [exp] 676 / 0 AT3G14470 571 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.007G137101 [exp] 518 / 5e-172 AT3G14470 616 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G029300 [exp] 375 / 3e-118 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126806 [exp] 350 / 6e-109 AT3G14470 587 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200500 [exp] 352 / 7e-109 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T127106 [exp] 352 / 1e-108 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 362 / 4e-114 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 350 / 2e-108 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 338 / 5e-104 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 336 / 2e-103 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 266 / 2e-78 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 265 / 1e-77 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039548 [exp] 233 / 1e-71 AT3G14460 164 / 6e-44 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 247 / 2e-71 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 223 / 5e-63 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10004126 [exp] 163 / 7e-43 AT3G14470 353 / 6e-106 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G015101.1 pacid=42814621 polypeptide=Potri.017G015101.1.p locus=Potri.017G015101 ID=Potri.017G015101.1.v4.1 annot-version=v4.1 ATGGATGGCACATGGTTTTTTATTCCAGCCAGAGGTGTTGAGGAGATGGAAGATATAGGTGAAAAATACTTTGATGATCTTGTCTCCAGGTCATTTTTCC GGCAATCACTTTATGCTCCATCATATTTCAGCATGCATGACATCATAAGTGATTTAGTTGAATACGTGTCAGGAGAATTTTGCTTTAAGCTTGGTATTAA TGAATCGGGATCTGGGTTGGAGGGTGAACATTCATGCTCGCTTCCAGAAAGGACTCGTTATTTATCAATCACTTCAGCGGCAGTTCGGACATTTCGTAGC ATTCATGGAGTCCAACATTTGCGCGCCTTGTTTCCACTATATATTTTCGGGGAAGATGATAGTGAGGCACTGAATGACATCTGGCTAAATCTTAAGCGCT TGCGAAGGCTATCTTTATGTCATCTAAAAGATATTTCTTCTCAGTTGCTCAATTCCATTGGCAACTTAAAACATTTGCGGCACTTGGACCTTTCTCGCAC CGCCATTAAAAGGTTACCTAAAAGTGTGTGCACTTTGTACTATTTGCAAAGCTTATTGTTAAAGAAGAGCCGACATCTCATGCAGTTGCCATCCAACCTT TTCAACTTGGTCGCCTTACAACATCTTGATATTGAGGGGACAAATCTGAAAAAGATGCCACCGAAAATGGGGAAACTCACAAGGCTTCGAACTTTGCAAT ATTACGTAGTGGGAAAAGAGAGGGGGTCTAGCATGAAAGAGCTGGGGAAGCTCTCACATTTAAGGAAAAAACTTTCTATTCGGAATCTCAGAGATGTTGC AAATGCTCAAGATGCTTTGGATGCCAATTTGAAGGGTAAGAAGAAGATTGAGGAGTTGAGGTTGATATGGGATGGCAATACAGATGACACCCAACAGGAG AGAGAAGTACTTGAGAAATTGGAGCCTTCTGAAATTGTGAAACAGCTTGCCATTAAGGGTTACGGGGGTACAATGTTTCCAGACTGGCTTGGAAACTCTT CTTTCTTAAATATGGTAGCGTTGACTCTTTCTGGATGTAAGAACTGCATCTCCTTACCACCATTGGGGCAGCTGCCATCTCTTGAAGAGCTCCATATTGA AGGATTTGATGATGTCGTGGCAGTTAGTTCTGAGTTCTATGGAAGCGACCCTTCGATGGAGAAGCCATTTAAATCCCTCAAAATATTAAAGTTTGAGGGG ATGCGAAACTGGCAGGAATGGAAAACAGATGTAGCTGGTGCTTTCCCTCATCTTGCAAATCTCTTGATAGCAGGTTGTCCCGAGTTAACAAATGGCTTGC CTAATTACCTTCCTTCTTTATTGATACTTGAGATTCAAGCGTGTCCACAGCTTGTGGTTTCAATTCCAGAGGCTCCCCTGCTCACCGAAATCAATGTAAA AGTCACTAAAACTTTCATCCCCTCTCACCGCTGGAATGCACTAAGCGATGAAGATTGCTAG
AA sequence Show only first row Show all	>Potri.017G015101.1 pacid=42814621 polypeptide=Potri.017G015101.1.p locus=Potri.017G015101 ID=Potri.017G015101.1.v4.1 annot-version=v4.1 MDGTWFFIPARGVEEMEDIGEKYFDDLVSRSFFRQSLYAPSYFSMHDIISDLVEYVSGEFCFKLGINESGSGLEGEHSCSLPERTRYLSITSAAVRTFRS IHGVQHLRALFPLYIFGEDDSEALNDIWLNLKRLRRLSLCHLKDISSQLLNSIGNLKHLRHLDLSRTAIKRLPKSVCTLYYLQSLLLKKSRHLMQLPSNL FNLVALQHLDIEGTNLKKMPPKMGKLTRLRTLQYYVVGKERGSSMKELGKLSHLRKKLSIRNLRDVANAQDALDANLKGKKKIEELRLIWDGNTDDTQQE REVLEKLEPSEIVKQLAIKGYGGTMFPDWLGNSSFLNMVALTLSGCKNCISLPPLGQLPSLEELHIEGFDDVVAVSSEFYGSDPSMEKPFKSLKILKFEG MRNWQEWKTDVAGAFPHLANLLIAGCPELTNGLPNYLPSLLILEIQACPQLVVSIPEAPLLTEINVKVTKTFIPSHRWNALSDEDC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.017G015101 [exp]	0	1
AT3G46750			unknown protein		Potri.009G035300 [exp]	10.39	0.6359
					Potri.018G145574 [exp]	13.56	0.7478
					Potri.008G129650 [exp]	22.58	0.6450
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Potri.010G122200 [exp]	26.38	0.7286
AT3G50430			unknown protein		Potri.005G133500 [exp]	29.49	0.7329
AT5G15270			RNA-binding KH domain-containi...		Potri.008G088600 [exp]	30.51	0.7312
AT5G05490		SYN1 BP5, SYN1 ...	SYNAPTIC 1, DETERMINATE, INFER...		Potri.008G072300 [exp]	42.72	0.6491
AT5G56310			Pentatricopeptide repeat (PPR)...		Potri.003G223900 [exp]	52.30	0.7174
AT1G21690		RFC4, EMB1968	replication factor C 4, embryo...		Potri.002G080100 [exp]	53.83	0.6080
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Potri.006G271480 [exp]	65.49	0.6903

Compare expression of checked genes

Potri.017G015101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.