Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20560 420 / 8e-148 DNAJ heat shock family protein (.1) AT4G28480 416 / 6e-146 DNAJ heat shock family protein (.1.2) AT5G01390 369 / 1e-127 DNAJ heat shock family protein (.1.2.3.4) AT3G08910 366 / 1e-126 DNAJ heat shock family protein (.1) AT1G10350 323 / 1e-109 DNAJ heat shock family protein (.1) AT1G59725 314 / 4e-106 DNAJ heat shock family protein (.1) AT5G25530 314 / 7e-106 DNAJ heat shock family protein (.1) AT3G47940 299 / 6e-100 DNAJ heat shock family protein (.1) AT2G20550 282 / 3e-94 HSP40/DnaJ peptide-binding protein (.1.2) AT1G44160 174 / 3e-51 HSP40/DnaJ peptide-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G135700 [exp] 455 / 2e-161 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 440 / 2e-155 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.017G016000 [exp] 437 / 2e-154 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 421 / 3e-148 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 343 / 1e-117 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 327 / 3e-111 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 326 / 5e-111 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 313 / 1e-105 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.015G066100 [exp] 307 / 2e-103 AT3G47940 436 / 5e-154 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017687 [exp] 413 / 9e-145 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10013981 [exp] 400 / 8e-140 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10015402 [exp] 399 / 4e-139 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10005033 [exp] 382 / 1e-132 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 380 / 4e-132 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10030803 [exp] 318 / 6e-108 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10013280 [exp] 319 / 3e-107 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10036668 [exp] 314 / 1e-105 AT3G47940 454 / 6e-161 DNAJ heat shock family protein (.1) Lus10041254 [exp] 306 / 3e-103 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10021961 [exp] 305 / 1e-102 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF01556 [poplar] [flax] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.017G016100.1 pacid=42813860 polypeptide=Potri.017G016100.1.p locus=Potri.017G016100 ID=Potri.017G016100.1.v4.1 annot-version=v4.1 ATGGGAGTGGATTACTACAAGGTATTGCAAGTTGATAAGACTGCAAAAGATGATGATTTGAAGAAAGCTTATAGGAAATTAGCCATGAAGTGGCATCCTG ATAAGAACCCTAATAACAAAAAAGAAGCTGAGGCTAAGTTCAAGCAAATCTCTGAAGCCTATGATGTTCTTAGCGATCCACAGAAAAGAGCAGTGTATGA CCAATATGGTGAAGAGGGTTTAAAGGGTCAAGTACCACCACCTGGTGCTGGTGGTGCTGGTCCTGGAGCTTCATTCTTTTCTACTGGAGATGGACCCACA TCGTTTCGGTTCAATCCTCGAAATGCTGATGATATTTTTGCTGAATTTTTTGGGTTTTCTCATCCGTTTGGAGGGATGGGAGGAGGTGGTGGTGGTGGTG TTGGAGGCATGAGAGGAGCAAGGTTTCCTGGTGGGATGTTTGGTGAAGATATCTTCAAGTCCTATGGTGAAGGTGGAGGATCAATGCATCAAGGTGTTCC TAGAAAGGCTGCTCCAGTTGAGAATAAGCTGCGATGTAGTCTTGAAGAGCTTTATAAGGGAGCTAGCAAGAGAATGAAGATATCCAGGGAGATTGTTGAT CCAAGTGGCAAGCCTGAGCAAGTGGAGGAGATCCTAACCATTGACATAAAGCCAGGTTGGAAGAAAGGCACAAAGATCACCTTCCCTGAGAAAGGGAATG AAATGCCAAATGTTATACCGGCAGATGTAGTCTTCATTATTGATGAAAAACCCCACCCCATATTCAGTCGTGATGGAAACGACTTGATCCTCACACAGAA GATTTCCTTAGCTGAAGCCTTGACAGGTTACACTGTCAATCTCACAACCTTAGACGGAAGGAACTTGACCATTCCTATCAACACCGTGATTCATCCAAAC TATGAGGAGGTTGTTCCGAAGGAAGGGATGCCAATCCCAAAAGATCCCACAAAGAGAGGAAATTTGAGAATCAAGTTTAGCGTCAAGTTTCCAACAAGGC TAACTGCAGAGCAGAAGGCAGGAATCAAAACTCTCATGGGACCTTGA
AA sequence Show only first row Show all	>Potri.017G016100.1 pacid=42813860 polypeptide=Potri.017G016100.1.p locus=Potri.017G016100 ID=Potri.017G016100.1.v4.1 annot-version=v4.1 MGVDYYKVLQVDKTAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLKGQVPPPGAGGAGPGASFFSTGDGPT SFRFNPRNADDIFAEFFGFSHPFGGMGGGGGGGVGGMRGARFPGGMFGEDIFKSYGEGGGSMHQGVPRKAAPVENKLRCSLEELYKGASKRMKISREIVD PSGKPEQVEEILTIDIKPGWKKGTKITFPEKGNEMPNVIPADVVFIIDEKPHPIFSRDGNDLILTQKISLAEALTGYTVNLTTLDGRNLTIPINTVIHPN YEEVVPKEGMPIPKDPTKRGNLRIKFSVKFPTRLTAEQKAGIKTLMGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20560			DNAJ heat shock family protein...		Potri.017G016100 [exp]	0	1
AT2G43810			Small nuclear ribonucleoprotei...		Potri.010G178700 [exp]	1.41	0.9102
AT4G27680			P-loop containing nucleoside t...		Potri.015G007700 [exp]	4.69	0.8727
AT5G67630			P-loop containing nucleoside t...		Potri.006G118900 [exp]	6.78	0.8724
AT2G31670			Stress responsive alpha-beta b...		Potri.001G413500 [exp]	7.14	0.8989
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.001G331400 [exp]	7.21	0.8980	CHC901
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Potri.006G133300 [exp]	8.36	0.8913
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Potri.006G110100 [exp]	8.36	0.8892
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Potri.014G194700 [exp]	8.71	0.8732
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Potri.006G109300 [exp]	9.38	0.8410
AT1G61620			phosphoinositide binding (.1)		Potri.004G026800 [exp]	9.48	0.8690

Compare expression of checked genes

Potri.017G016100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.