Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44180 1323 / 0 HD Homeodomain-like transcriptional regulator (.1.2) AT1G28420 939 / 0 HD HB-1 homeobox-1 (.1) AT4G12750 144 / 3e-34 Homeodomain-like transcriptional regulator (.1) AT4G03250 62 / 2e-09 HD Homeodomain-like superfamily protein (.1) AT5G08630 55 / 6e-07 DDT domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G135500 [exp] 2583 / 0 AT5G44180 1226 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.011G057700 [exp] 1374 / 0 AT1G28420 1262 / 0.0 homeobox-1 (.1) Potri.004G048675 [exp] 1340 / 0 AT1G28420 1266 / 0.0 homeobox-1 (.1) Potri.014G173300 [exp] 156 / 6e-38 AT4G12750 1038 / 0.0 Homeodomain-like transcriptional regulator (.1) Potri.009G071700 [exp] 64 / 9e-10 AT4G03250 303 / 5e-97 Homeodomain-like superfamily protein (.1) Potri.001G276800 [exp] 61 / 4e-09 AT4G03250 275 / 2e-86 Homeodomain-like superfamily protein (.1) Potri.004G138900 [exp] 49 / 3e-05 AT5G08630 652 / 0.0 DDT domain-containing protein (.1) Potri.019G008541 [exp] 46 / 0.0003 AT5G08630 683 / 0.0 DDT domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039870 [exp] 1766 / 0 AT5G44180 1398 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10018634 [exp] 1737 / 0 AT5G44180 1391 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10015325 [exp] 1157 / 0 AT1G28420 1273 / 0.0 homeobox-1 (.1) Lus10025454 [exp] 1132 / 0 AT1G28420 1275 / 0.0 homeobox-1 (.1) Lus10017688 [exp] 187 / 1e-52 AT5G44180 148 / 4e-40 Homeodomain-like transcriptional regulator (.1.2) Lus10033644 [exp] 183 / 2e-51 AT1G28420 148 / 4e-40 homeobox-1 (.1) Lus10015400 [exp] 151 / 6e-41 AT1G28420 166 / 6e-47 homeobox-1 (.1) Lus10013979 [exp] 147 / 4e-39 AT1G28420 161 / 4e-45 homeobox-1 (.1) Lus10016078 [exp] 145 / 2e-34 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10012302 [exp] 142 / 2e-33 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02791 [poplar] [flax] DDT DDT domain CL0123 [poplar] [flax] HTH PF05066 [poplar] [flax] HARE-HTH HB1, ASXL, restriction endonuclease HTH domain CL0123 [poplar] [flax] PF15612 [poplar] [flax] WHIM1 WSTF, HB1, Itc1p, MBD9 motif 1 CL0123 [poplar] [flax] PF15613 [poplar] [flax] WSD Williams-Beuren syndrome DDT (WSD), D-TOX E motif
Representative CDS sequence Show only first row Show all	>Potri.017G016200.1 pacid=42813691 polypeptide=Potri.017G016200.1.p locus=Potri.017G016200 ID=Potri.017G016200.1.v4.1 annot-version=v4.1 ATGGAGGAGGCTAGTAGTGGTGGTGGAAGTGGCGGTGTAGAGGTGGAGGAGAAGAAAAAGACTCCAGGGGAAGGAGAAAGTAAGTCCAAGAGGAAAATGA AAACTGCTTCTCAGCTTGAGATTTTGGAGAAAACTTATGCAGCGGATACATACCCATCAGAAGCAGTAAGGGCTGAGCTTTCAGTGCAATTAGGACTGTC TGATCGGCAGCTGCAGATGTGGTTCTGTCATAGGCGTTTGAAGGACAGGAAGGCGCCATTGGTGAAGCGCCCACATAAGGAGTCACCATCCCCAGCAGGG ATGCCAGGTGGAGTGGAAATGGGAGTAGGGACTGAGGTGGGAAATGAACATGGGTCAGGGTCAGCAAGTCTATCTGGGCTCGGCGTGGATTCAAGGCGAG CTGTTGGGAGGCCAACGGGGGTGGCTGTTCCAAGAATTAGTGCTGATGTGCAAGCAATGAAGAGGTATTATGAGCCACAGCAATCTGTAGCTGAGCTTAG AGCGATAGCATTTGTCGAAGCACAGTTGGGGGAGCCTCTGAGAGAGGATGGTCCGATTCTTGGGATCGAGTTTGACCCCTTGCCACCAGATGCTTTTGGT GCACCTATAGGATCAGCAACACTAGGGCAGCAGAAGCAACCTGTAAGGATTTTCGAGACCAACCTATATGAGCGACCTGATATAAAACCCATCAAGGGTA CTACAAGGACTCTGCACGAATACCAGTTCCTCCCACAGCAGCCAACTGTTAAAGCAGAGGCATATGAAAGAGCTGCCCCGTCCTTTCAGTATGGCTCACC TGCGGATGGTCATAATACAAAGACTGGATCACTATCTGCTACCCGATCATTCATGCATGCTAATGAACAAGTGTCCTCTGGATATGGTTTTTCAAGTCAG GTGCCTAGTTTAACTCTTATGCCTCAAGAAGGCAGGCAGGGCCATCTCTTGCCATCTGCTACAGGAGAGTATGAAAATACTTCACAAAAAATCCCTTTTA CAAATGTTGGTATGGATGTGCAAATTGGTGCCCACCCAATTACTGCATTGGACAATCCTTTTATGTCATCTGATCAGAGAGTGACCCATGATGAGAATGC TTTGCGCATGGAGAGGAAACGCAAGAGTGAGGAGGCAAGAATAGCTCGTGAAGTTGAAGCCCATGAAAAAAGGATCCGAAAAGAGCTTGAAAAACAAGAT ATTTTGAACCGAAAGAGAGAAGAGCAAATAAGGAAAGAAATGGAAAGACATGACCGTGAAAGGCGGAAGGAAGAAGAAAGGTTGTTGCGTGAAAAGCAGC GAGAAGTAGAGAGACACCAGAGGGAGCAAAGGCGTGAACTGGAGCGCAGGGAAAAATTCTTGCAGAAGGAGTCTATCAGAGTTGAGAAAATGAGGCAAAA GGAAGAATTGCGTAGACAAAGGGAGGCAGCAAGGCAGAAAGCTGCTAGTGAGAGGGCAATTGCACGTAGGATGGCTAAAGAATCACTGGAGCTTGTCGAG GATGAACGTTTGGAACTCATGGAGCTAGCTGCCTCCAGCAAGGGGTTACCTTCTATAATTCCGTTGGACTTTGAAACTTTGCAAAATCTAGATTTATTTC GAGATAAGCTGACCAAGTTCCCTCCCAAATCTGTGCTTTTAAAGAGGCCTTTTCTTATTCAACCCTGGAATGGTTCTGAGGAGAATATAGGAAATCTTCT TATGGTTTGGAGGTTCTTAATCACTTTTGTGGATGTTCTTGGGATATGGCCATTCACTCTCGATGAGTTTGTCCAAGCTTTTCATGATTATGAACCAAGG TTATTAGGCGAGATACACATTTCTTTATTAAAATCCATCATTAAAGATATCGAAGATGTTGCCAGGACACCGGCAACTAGTCTGGGGCCAAATCAGAACA GTGCTGCTAATCCTGGTGGTGGACATCCTCAGATTGTTGAAGGGGCATATGCATGGGGTTTTGATATACGTAGCTGGCAGCGGCACTTAAATCCATTAAC TTGGCCTGAAATATTGCGGCAATTCGGTCTTTCTGCAGGTTTTGGACCACAACTGAAGAAAAGGAATGTTGAGCAGGCATATCTCTGTGATGATAATGAG GGTAATGATGGTGAAGATGTTATCACCAATTTACGGAATGGAGCAGCTGTTGAAAATGCTTTTGCCATAATGCAAGAAAGGGGATTTTCTAATCCACGCA GATCTAGGCATCGTTTGACGCCTGGTACTGTTAAATTTGCTTCGTTTCATGTTCTGTCTCTTGAGGGGAGCAAGGGTTTGACCATATTAGAAGTAGCAGA CAAGATTCAGAAATCTGGTCTGAGGGATCTTACAACAAGCAAGACACCTGAAGCATCAATTGCTGCTGCTTTGTCAAGGGATTCTAAACTTTTTGAGAGA ACGGCTCCATCAACATATTGTGTACGTCCTCCATATAGGAAGGACCCAGCTGATGCAGAGGCAATACTTTCTGCTGCCAGAGAAAGAATTCGGGTATTTA AAAGTGGTATTGTAGATGGAGAAGATGCTGATGATGCTGAAAGAGATGAAGATTCTGAAAGTGATGTGGCAGAGGATCCTGACATTGATGATTTAGGTAC TGAATTAAATTCTAAGAAAGAGGCTCATGATTCTCCTGAAGTTAATGAATTTAATGGGAAAACACTCTTGATGAATGGGAAGGAAAGTGGTGATGTTCTG AAAACTCCACAAGTTAGCCTTGTGAATGTTGGTGCGGGTTTGACTTCACTGCATTCTGAAGGCACTAATGAGGTAAGGGGGGTTGCTTCTTCCATTGATC GATCTGTAGATGTTGCTGAAATCTGCACTACTCCTGTGCAAGGAGATGTAGATATTGATGAAAGCAACCCTGGTGAGCCATGGGTTCAAGGACTTGCAGA TGGGGAATACTCTGATCTGAGTGTTGAGGAGCGTCTTAGTGCACTTGTTGCATTGATTGGTGTGGCAATTGAAGGAAACTCTATCCGCATCGTTCTTGAG GAACGCTTAGAAGCAGCAAATGCTTTAAAGAAGCAAATGTGGGCAGAAGCACAACTTGATAAACGTCGTATGAAGGAAGAGTTTGTCATGAGGACACAAT ATTCATCATTTACAGGGAACAAGATGGAATTGAACCTTACAATTTCTGCATCAGAGGGTAGACAAAGCCCTATGGTAAATGTTGATGACAGAAGTAATGG GATGTCCGTGAATGCTTCTTTTCAGCAAGAAAGATCAAGTGACCAGCAGAGTGACATGAATTATCTGACTAACATGTCTTCTGAAGGAAACATGCAAATG CAAGATTTATCTGCTGATACAGATAATCTGCCATATCAACAAACTGGACATGCAAATGAAAAGTCACGTTCACAGTTAAAATCTGTTATTGGTCACAGGG CAGAAGAGATGTATGTATATAGATCTTTGCCCCTTGGTCAGGATCGCAGGCGTAATCGGTACTGGCAGTTCACTACATCTGCTTCCCGCAATGATCCTGG CTGTGGCAGGATCTTTGTTGAGTTACACGATGGTCGCTGGAGGGTTATTGATTCTGAAGAGGGTTTTAATGCTCTGTTGTCATCTTTGGATGTACGTGGG GTTAGGGAATCCCATTTGCATGCAATGCTGCACAAGATTGAGGTGCCTTTCAAGGAAACTCTCAGGAAGAGAATGCTACATGCTAGCACTGAAGGGAAAA GTAAAGGCCCAATCAAAGCTGAAGCTGTTGAAACAGCTGCTGGCATTGAATGTGGCTCTGGTATGGATAGTCCACAAAGCACTGTCTGTATTCCAGATTC TGATATGTCTGAGACCTCAACATCTTTCACAATCGAGCTTGGAAGGAATGAAATTGAAAAAAATCATGCCTTGAAGAGATTTCAAGATTTTGAGAAGTGG ATGTGGAAAGAATGCTTCAAGTCTTCTGTATTGTGTGCCATGAAGTATGGGAAGAAAAGATGCACACAACGGCTTGGTGTTTGTGATTACTGTCATGACA CTTATTTATCTGAAGACAACCATTGCCCTTCTTGCCACAAGACATATGATGCCTCCCAGGTTGGCTTGAATATCTCTGAGCACGTGGCTCATTGTGAAAG GAAGCTAAAGGTGGACCCTGACAGTGCTTTGTGTAGCTCATCTTTTCCGCTGAGGATCAGATTGCTTAAATTGCTACTAGCTTTGATTGAGGTTTCAGTT CTGCCAGAAGCTCTCCAACCTGTTTGGACTGATGACTACCGGAAATCTTGGGGTATGAAGCTGCAGTCCTCATCGTCTGTTGAAGACCTACTTCAGATTC TGACACTATTGGAGGGTGGCATGAAGAGGGACTATTTGTCTTCGAACTATGAAACCAGCAGTGAACTTTTGAGATCATCTGACCCATCTGGATGTGCTGC TTATGGTTCTTTCAATACAGAAACAGTTCCTGTGCTTCCATGGTTGCCACAAACAACAGCTGCTGTAGCTCTAAGGGTCATTGAATTTGATGCTTCAATC TCATACACGCTGCATCAAAAACCGGAGGCTCATAAGGACAGGAGCACTAGGAGCTTCATTAAGCTTCCATCCAAGTATGCTGCCATGAAGAACACCCCAG ATCATGAAATCACTGAAAGTTCACGTAAAGCTGGGTTATTTCAAGAAGATAATTGGGTTGATGTAGGGATTGGGTTAGCAGGACTGGGCCGCGAACAAGG GATCCGGGGCAGGGGTCGAGGTCGCACTCGTGGTGGGAGATCACAAACAAGGATTATTGGGTCCAGATCTGTATCTAGCAAGAGAAGTGCAGCCAAGAGC AGTGACAGATTAGGGAAGGCATTGTCATGGAAAGGACGACCTCGTGGCCGTGGAGGGTGTAAGCGTGGACGTCGCAGTGTGAGAAGTAGGCAAAAAGCAG TCAAGCAAGCCTCTGATTTTATTCCTGAGAGAAAGATCCCTCAAGAAACTATTCGTGAACAGTCAACAAATTGCTTGGGAAGGGATGACTGGAATGGTGA TGAAACAAGGTTCGTGGAGGATGCCGAAAATGCCAGTAGTTCTGAAAGATCTGAGTACGATGATGAAAATGAAAATATTCTGGCATCAGGAGATGAATAT GATAATATGCGAGTTGATGACTATGCTGGTGGTTTTAATGGCAAGTCTGATGACTTACTGGAGGGAAGTGATTATGTTATGGATGGCAATGAAGATGATG ATGATGCCGTAAATGAAGATGAGCTAGGGGATTTGGATGTTGAGGAATACATTAACGGGGACCCAGATGATGGTACCGAATCTTCATCTTCAGATTTCAT TGACTAG
AA sequence Show only first row Show all	>Potri.017G016200.1 pacid=42813691 polypeptide=Potri.017G016200.1.p locus=Potri.017G016200 ID=Potri.017G016200.1.v4.1 annot-version=v4.1 MEEASSGGGSGGVEVEEKKKTPGEGESKSKRKMKTASQLEILEKTYAADTYPSEAVRAELSVQLGLSDRQLQMWFCHRRLKDRKAPLVKRPHKESPSPAG MPGGVEMGVGTEVGNEHGSGSASLSGLGVDSRRAVGRPTGVAVPRISADVQAMKRYYEPQQSVAELRAIAFVEAQLGEPLREDGPILGIEFDPLPPDAFG APIGSATLGQQKQPVRIFETNLYERPDIKPIKGTTRTLHEYQFLPQQPTVKAEAYERAAPSFQYGSPADGHNTKTGSLSATRSFMHANEQVSSGYGFSSQ VPSLTLMPQEGRQGHLLPSATGEYENTSQKIPFTNVGMDVQIGAHPITALDNPFMSSDQRVTHDENALRMERKRKSEEARIAREVEAHEKRIRKELEKQD ILNRKREEQIRKEMERHDRERRKEEERLLREKQREVERHQREQRRELERREKFLQKESIRVEKMRQKEELRRQREAARQKAASERAIARRMAKESLELVE DERLELMELAASSKGLPSIIPLDFETLQNLDLFRDKLTKFPPKSVLLKRPFLIQPWNGSEENIGNLLMVWRFLITFVDVLGIWPFTLDEFVQAFHDYEPR LLGEIHISLLKSIIKDIEDVARTPATSLGPNQNSAANPGGGHPQIVEGAYAWGFDIRSWQRHLNPLTWPEILRQFGLSAGFGPQLKKRNVEQAYLCDDNE GNDGEDVITNLRNGAAVENAFAIMQERGFSNPRRSRHRLTPGTVKFASFHVLSLEGSKGLTILEVADKIQKSGLRDLTTSKTPEASIAAALSRDSKLFER TAPSTYCVRPPYRKDPADAEAILSAARERIRVFKSGIVDGEDADDAERDEDSESDVAEDPDIDDLGTELNSKKEAHDSPEVNEFNGKTLLMNGKESGDVL KTPQVSLVNVGAGLTSLHSEGTNEVRGVASSIDRSVDVAEICTTPVQGDVDIDESNPGEPWVQGLADGEYSDLSVEERLSALVALIGVAIEGNSIRIVLE ERLEAANALKKQMWAEAQLDKRRMKEEFVMRTQYSSFTGNKMELNLTISASEGRQSPMVNVDDRSNGMSVNASFQQERSSDQQSDMNYLTNMSSEGNMQM QDLSADTDNLPYQQTGHANEKSRSQLKSVIGHRAEEMYVYRSLPLGQDRRRNRYWQFTTSASRNDPGCGRIFVELHDGRWRVIDSEEGFNALLSSLDVRG VRESHLHAMLHKIEVPFKETLRKRMLHASTEGKSKGPIKAEAVETAAGIECGSGMDSPQSTVCIPDSDMSETSTSFTIELGRNEIEKNHALKRFQDFEKW MWKECFKSSVLCAMKYGKKRCTQRLGVCDYCHDTYLSEDNHCPSCHKTYDASQVGLNISEHVAHCERKLKVDPDSALCSSSFPLRIRLLKLLLALIEVSV LPEALQPVWTDDYRKSWGMKLQSSSSVEDLLQILTLLEGGMKRDYLSSNYETSSELLRSSDPSGCAAYGSFNTETVPVLPWLPQTTAAVALRVIEFDASI SYTLHQKPEAHKDRSTRSFIKLPSKYAAMKNTPDHEITESSRKAGLFQEDNWVDVGIGLAGLGREQGIRGRGRGRTRGGRSQTRIIGSRSVSSKRSAAKS SDRLGKALSWKGRPRGRGGCKRGRRSVRSRQKAVKQASDFIPERKIPQETIREQSTNCLGRDDWNGDETRFVEDAENASSSERSEYDDENENILASGDEY DNMRVDDYAGGFNGKSDDLLEGSDYVMDGNEDDDDAVNEDELGDLDVEEYINGDPDDGTESSSSDFID

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44180	HD		Homeodomain-like transcription...		Potri.017G016200 [exp]	0	1
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Potri.008G158800 [exp]	3.46	0.7636	AGO906,Pt-AGO1.2
AT1G70620			cyclin-related (.1.2.3)		Potri.008G186900 [exp]	3.74	0.8331
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Potri.009G004100 [exp]	5.74	0.8021
AT3G54390	Trihelix		sequence-specific DNA binding ...		Potri.003G195300 [exp]	7.00	0.7157
AT5G44180	HD		Homeodomain-like transcription...		Potri.007G135500 [exp]	7.07	0.7936
AT1G02890			AAA-type ATPase family protein...		Potri.002G205900 [exp]	7.74	0.7926
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Potri.005G059000 [exp]	8.06	0.7624
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Potri.017G070500 [exp]	10.19	0.8011
AT1G13940			Plant protein of unknown funct...		Potri.008G092800 [exp]	10.95	0.7401
AT3G08670			unknown protein		Potri.006G110700 [exp]	11.18	0.7435

Compare expression of checked genes

Potri.017G016200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.