Plant FIBer expression Database

Potri.017G016450 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G161200
[exp]
40 / 9e-05 AT4G00350 657 / 0.0 MATE efflux family protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G016450.1 pacid=42814129 polypeptide=Potri.017G016450.1.p locus=Potri.017G016450 ID=Potri.017G016450.1.v4.1 annot-version=v4.1
ATGCTCTATTATTTCTTTCCAGCCTTTGAAAAACAAGCTATATCTACTCACAAGAATCTTGTTCTTGGCTTCTACATCCCTTGCAGTCAAGGACAATCTC
GAGTTTCCTGTTTTCGTTACCTATTCTTCAGGGTGTTTTCTTCTATTGCTTTATCCATCAGGTTGGATCATTGCTTTGGTCTAGGTAGCTTACGCAGTTG
GTTGGTGCTAGGACAGACGGAAATGATTGCCTTGGCTAGCCTTCAAGGACATTTGGGAATTTATTCGGCCTGCAGATTTGGTATTTCATGA
AA sequence
>Potri.017G016450.1 pacid=42814129 polypeptide=Potri.017G016450.1.p locus=Potri.017G016450 ID=Potri.017G016450.1.v4.1 annot-version=v4.1
MLYYFFPAFEKQAISTHKNLVLGFYIPCSQGQSRVSCFRYLFFRVFSSIALSIRLDHCFGLGSLRSWLVLGQTEMIALASLQGHLGIYSACRFGIS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G00350 MATE efflux family protein (.1... Potri.017G016450
[exp]
0 1
AT3G25930 Adenine nucleotide alpha hydro... Potri.010G123300
[exp]
5.47 0.8274
AT3G48950 Pectin lyase-like superfamily ... Potri.017G145900
[exp]
12.64 0.7887
AT1G05680 UGT74E2 Uridine diphosphate glycosyltr... Potri.007G140700
[exp]
21.86 0.8477
AT4G27290 S-locus lectin protein kinase ... Potri.001G412700
[exp]
22.27 0.8259
AT1G29740 Leucine-rich repeat transmembr... Potri.011G073041
[exp]
25.69 0.7740
AT1G15170 MATE efflux family protein (.1... Potri.008G126500
[exp]
27.38 0.7630
AT1G15520 ATABCG40, ABCG4... Arabidopsis thaliana ATP-bindi... Potri.003G057250
[exp]
40.79 0.7735
AT5G05800 unknown protein Potri.005G153700
[exp]
49.02 0.7600
AT3G13690 Protein kinase protein with ad... Potri.014G038300
[exp]
53.12 0.6994
AT1G40390 DNAse I-like superfamily prote... Potri.014G186236
[exp]
83.78 0.6939

Potri.017G016450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.