Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28440 1130 / 0 HSL1 HAESA-like 1 (.1) AT4G28490 1025 / 0 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65710 699 / 0 HSL2 HAESA-like 2 (.1) AT3G49670 594 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G25930 593 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G09970 591 / 0 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G65700 586 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G19700 575 / 0 IKU2 HAIKU2, Leucine-rich repeat protein kinase family protein (.1) AT5G49660 563 / 0 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G28650 558 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G135400 [exp] 1517 / 0 AT1G28440 1109 / 0.0 HAESA-like 1 (.1) Potri.004G049100 [exp] 1155 / 0 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.011G058100 [exp] 1134 / 0 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.006G235800 [exp] 622 / 0 AT5G25930 1074 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.009G081800 [exp] 606 / 0 AT1G09970 1033 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.018G057100 [exp] 599 / 0 AT5G25930 1034 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.002G106800 [exp] 599 / 0 AT1G09970 1204 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.007G009200 [exp] 597 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.018G088200 [exp] 583 / 0 AT5G25930 885 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018636 [exp] 1249 / 0 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10039872 [exp] 1054 / 0 AT1G28440 942 / 0.0 HAESA-like 1 (.1) Lus10013968 [exp] 1034 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10015393 [exp] 1015 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10007232 [exp] 608 / 0 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10006028 [exp] 607 / 0 AT5G25930 1116 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10028232 [exp] 605 / 0 AT1G09970 1181 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10005491 [exp] 594 / 0 AT5G25930 1104 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10039641 [exp] 570 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 564 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.017G016600.1 pacid=42814025 polypeptide=Potri.017G016600.1.p locus=Potri.017G016600 ID=Potri.017G016600.1.v4.1 annot-version=v4.1 ATGTTTTTCTACCTTTCCGTTCTCTTTCTCTCTCTACTCTTCACATCCCACTCACTGAACCAGGACGGCCTGTTTCTCCAGCGAGTCAAACTCGGTCTCT CCGACCCAGCTCATTCCCTCTCTTCTTGGAACGACAGGGACGACACTCCCTGCAACTGGTATGGTATCACATGCGACAACTCGACTCACCGAGTCAGTTC AGTGGACCTTTCCAGCTCGGAGCTCATGGGACCCTTCCCTTACTTCCTTTGCCGCCTCCCCTTTTTGACGTCGATCAATCTGTTGAACAATTCCATCAAC TCATCTCTCACCGATGACATTGCCACCTGTCAGAATCTCGAGAGCCTTGACCTGAGTGACAATCTCTTGGTGGGCTCCATTCCCGCGTCACTGTCCGAGT TGAGAAACCTCAAGCTACTCAATTTGGAGTCGAACAACTTTTCCGGTGTTATTCCGGCGAAGTTCGGTCTGTTCCAGAAACTGGAGTGGATTTCACTTGC TGGGAACCTGCTCACTGGGTCCATACCGAGTGAGCTTGGTAACATTTCCACTCTCCAGCATCTTCTAGTGGGTTATAACCCTTTTGCACCGAGTAGGATA CCGAGTCAGTTCGGTAACTTGAGTAACCTGGTGGAGCTCTGGCTAGCTAATTGTAACCTTGTGGGTCCGATTCCTGAGAGTTTAAGCAAGCTAACTCGGT TGACCAATCTTGATTTCTCACTGAATCGACTAACTGGGTCGATACCGAGCTGGCTTACTGGATTGAAGAGCATTGAGCAAATTGAGCTCTATAACAACTC CTTATCAGGTGGATTGCCTCTGGGATTTTCGAATTTGACCATGCTGAGAAGATTTGATGCCTCAACGAACCAGTTAACTGGGACAATCCCTACTCAGTTG ACTCAGTTGGAGCTCGAGTCCCTGAACTTGTTTGAGAACAGACTTGTAGGGACTCTGCCAGAGAGCATAGCAAACTCACCAAATTTGTATGAACTCAAAT TGTTCAATAATGAACTTACCGGTGAGTTACCAAGTCAGCTCGGGCTTAACTCACCATTGAAGTGGTTAGATGTTTCGTACAATAAATTCTCCGGTAACAT TCCGGGGAATTTGTGTGCAAAAGGTGAGTTGGAGGACTTGATTTTGATTTACAATTCGTTTTCCGGTAAAATCCCGGAGAGTCTGGGAAAATGTGATAGT TTAGGCCGGGTTCGGTTAAGGAATAATGGGTTTACAGGCGCTGTGCCTGAGGAATTCTGGGGGCTGCCGCAAGTTTACTTGTTTGAACTTGAAGAGAATT CATTCTCCGGGAAAGTCTCTAATAGGATTGCCTCTGCTTATAATCTATCTGTGTTGAAGATTTCGAAAAATAAGTTCTCGGGTAATTTACCAATGGAGAT TGGTTTTCTAGGCAAGTTGATTGACTTTTCGGCGAGTGATAACATGTTTACAGGTCCAATTCCGGAGAGTATGGTTAATTTGAGTACCCTGAGTATGCTT GTGCTTGGTGACAATGAATTGTCTGGTGGGCTTCCGGGTGGGATTCAGGGTTGGAAGAGCTTGAATGAGCTTAATTTGGCGAATAACAAGCTTTCTGGCC CGATCCCGGATGAGATTGGGAGCTTGCAAGTGCTTAATTATCTTGATCTGTCCGGAAATTACTTTTCGGGGAAGATTCCGGTACAATTGGAGGATTTGAA TCTCAATCTGTTGAACTTGTCGAACAATATGCTTTCGGGGGCGCTCCCTCCACTTTATGCTAAAGAGATGTATAGGAGTAGCTTTGTGGGAAATCCAGGT TTGTGTGGTGATTTGAAGGATCTTTGTCTGCAGGAGGGTGATTCGAAGAAGCAGAGTTACTTGTGGATTCTTCGGTCGACTTTTATACTTGCTGTGGTAG TGTTTGTTGTTGGTGTTGTTTGGTTCTACTTCAAGTACCAGGATTTCAAGAAAGAAAAGGAGGTTGTTACTATATCGAAGTGGAGATCGTTCCATAAGAT TGGTTTTAGTGAATTTGAGATCCTTGATTTTCTTAGAGAAGATAATGTGATTGGAAGTGGAGCTTCTGGGAAAGTCTACAAGGCAGTGCTTAGCAATGGC GAGACCGTGGCAGTGAAGAAGCTAGGTGGAGAGAGCAAGAAAGACAATACAAATGGCAGCTCTGAAAAAGACGAATTCGAAGCAGAAGTTGAGACTTTGG GGAGGATTAGGCACAAAAACATTGTCAGATTGTGGTGTTGTTGCAATACCGGAGATTGCAAGCTTCTGGTATACGAATATATGCCAAATGGGAGCTTGGG GGACTTGTTGCATGGCAGCAAGGGAGGCTCGTTGGATTGGCCTACAAGGTACAGGATAGCTTTGGATGCAGCTGAGGGCTTGTCTTATTTGCATCATGAT TGTGTTCCTCCGATTGTTCATCGGGATGTAAAATCGAACAACATATTGTTAGATGCAGAATTTGGTGCCAGGGTTGCCGACTTTGGAGTTGCCAAAGTTG TTCAAGGAGTCAACAAAGGAATGGAATCAATGTCTGTTATTGCAGGCTCCTGCGGCTATATTGCACCAGAATATGCATATACTCTCAGAGTGAACGAGAA GAGCGACATCTATAGTTTCGGGGTGGTCATATTAGAGTTGGTGACAGGCAGACTCCCCGTAGATCCAGAGTTCGGAGAGAAAGACTTGGTGAAATGGGTT TGCACCACCTTAGACCAGAATGGGATGGATCATGTAATCGACCCCGAGCTCGATTCACGTTACAAGGATGAGATTTCCAAGGTTCTCGATATCGGTCTCC GATGCACAAGCTCATTTCCCATCAGCCGCCCCTCAATGCGAAGGGTGGTGAAAATGTTGCAGGAAGCTGGCATGGGAGAGAAGCCTACAGCCGACAAGAA TGATGAGAAGCCAACTCCTTATTACCATGAAGAAGTCTCTGATCAGGGAAGTTTAGTTCAAGAATTTTGA
AA sequence Show only first row Show all	>Potri.017G016600.1 pacid=42814025 polypeptide=Potri.017G016600.1.p locus=Potri.017G016600 ID=Potri.017G016600.1.v4.1 annot-version=v4.1 MFFYLSVLFLSLLFTSHSLNQDGLFLQRVKLGLSDPAHSLSSWNDRDDTPCNWYGITCDNSTHRVSSVDLSSSELMGPFPYFLCRLPFLTSINLLNNSIN SSLTDDIATCQNLESLDLSDNLLVGSIPASLSELRNLKLLNLESNNFSGVIPAKFGLFQKLEWISLAGNLLTGSIPSELGNISTLQHLLVGYNPFAPSRI PSQFGNLSNLVELWLANCNLVGPIPESLSKLTRLTNLDFSLNRLTGSIPSWLTGLKSIEQIELYNNSLSGGLPLGFSNLTMLRRFDASTNQLTGTIPTQL TQLELESLNLFENRLVGTLPESIANSPNLYELKLFNNELTGELPSQLGLNSPLKWLDVSYNKFSGNIPGNLCAKGELEDLILIYNSFSGKIPESLGKCDS LGRVRLRNNGFTGAVPEEFWGLPQVYLFELEENSFSGKVSNRIASAYNLSVLKISKNKFSGNLPMEIGFLGKLIDFSASDNMFTGPIPESMVNLSTLSML VLGDNELSGGLPGGIQGWKSLNELNLANNKLSGPIPDEIGSLQVLNYLDLSGNYFSGKIPVQLEDLNLNLLNLSNNMLSGALPPLYAKEMYRSSFVGNPG LCGDLKDLCLQEGDSKKQSYLWILRSTFILAVVVFVVGVVWFYFKYQDFKKEKEVVTISKWRSFHKIGFSEFEILDFLREDNVIGSGASGKVYKAVLSNG ETVAVKKLGGESKKDNTNGSSEKDEFEAEVETLGRIRHKNIVRLWCCCNTGDCKLLVYEYMPNGSLGDLLHGSKGGSLDWPTRYRIALDAAEGLSYLHHD CVPPIVHRDVKSNNILLDAEFGARVADFGVAKVVQGVNKGMESMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRLPVDPEFGEKDLVKWV CTTLDQNGMDHVIDPELDSRYKDEISKVLDIGLRCTSSFPISRPSMRRVVKMLQEAGMGEKPTADKNDEKPTPYYHEEVSDQGSLVQEF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.017G016600 [exp]	0	1
AT5G64667		IDL2	inflorescence deficient in abs...		Potri.005G189900 [exp]	1.00	0.8942
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.005G071100 [exp]	2.44	0.8842
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.015G003500 [exp]	3.31	0.8462
AT2G18370			Bifunctional inhibitor/lipid-t...		Potri.009G025200 [exp]	4.47	0.8843
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.011G072300 [exp]	8.83	0.8788
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Potri.011G095100 [exp]	9.16	0.8624	ATGSL04.1
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.007G135000 [exp]	9.21	0.8797
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G047000 [exp]	10.95	0.8479
AT5G05340			Peroxidase superfamily protein...		Potri.016G132900 [exp]	16.43	0.8239	Pt-PRX1.14
AT5G45160			Root hair defective 3 GTP-bind...		Potri.015G112600 [exp]	16.88	0.8391

Compare expression of checked genes

Potri.017G016600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.