Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28500 344 / 3e-119 NAC ANAC073, SND2, NST7 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) AT1G28470 296 / 4e-100 NAC ANA010, ANAC010, SND3, NST8 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 3, NAC domain containing protein 10 (.1) AT4G29230 278 / 2e-90 NAC ANAC075, NST9 NAC domain containing protein 75 (.1) AT5G56620 258 / 2e-84 NAC ANAC099 NAC domain containing protein 99 (.1) AT1G25580 195 / 4e-59 NAC ANAC008, SOG1 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G14490 157 / 1e-45 NAC ANAC085 NAC domain containing protein 85 (.1) AT3G01600 150 / 1e-42 NAC ANAC044 NAC domain containing protein 44 (.1) AT5G53950 62 / 6e-11 NAC ATCUC2, CUC2, ANAC098 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G02230 60 / 6e-10 NAC ANAC004 NAC domain containing protein 4 (.1) AT5G18270 57 / 4e-09 NAC ANAC087 Arabidopsis NAC domain containing protein 87 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G135300 [exp] 560 / 0 AT4G28500 337 / 3e-116 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.004G049300 [exp] 360 / 2e-125 AT4G28500 353 / 1e-122 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.011G058400 [exp] 343 / 7e-118 AT4G28500 344 / 4e-118 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.018G068700 [exp] 280 / 4e-92 AT4G29230 511 / 2e-179 NAC domain containing protein 75 (.1) Potri.006G152700 [exp] 280 / 9e-92 AT4G29230 489 / 9e-171 NAC domain containing protein 75 (.1) Potri.008G116600 [exp] 213 / 2e-66 AT1G25580 509 / 4e-180 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.010G129700 [exp] 210 / 4e-65 AT1G25580 476 / 5e-167 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.001G343800 [exp] 199 / 4e-61 AT3G01600 266 / 5e-86 NAC domain containing protein 44 (.1) Potri.002G005800 [exp] 59 / 8e-10 AT1G76420 326 / 7e-110 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018637 [exp] 362 / 4e-126 AT4G28500 350 / 2e-121 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10039873 [exp] 354 / 7e-123 AT4G28500 355 / 5e-123 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10013967 [exp] 316 / 2e-107 AT4G28500 320 / 2e-109 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10015392 [exp] 294 / 1e-99 AT4G28500 308 / 2e-105 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10034999 [exp] 269 / 1e-86 AT4G29230 388 / 3e-130 NAC domain containing protein 75 (.1) Lus10012927 [exp] 256 / 6e-83 AT4G29230 346 / 3e-115 NAC domain containing protein 75 (.1) Lus10021708 [exp] 201 / 2e-61 AT1G25580 462 / 4e-161 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10041492 [exp] 187 / 2e-56 AT1G25580 486 / 7e-171 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10003668 [exp] 183 / 1e-54 AT5G14490 273 / 2e-88 NAC domain containing protein 85 (.1) Lus10009669 [exp] 59 / 1e-09 AT3G18400 308 / 3e-104 NAC domain containing protein 58 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.017G016700.1 pacid=42813497 polypeptide=Potri.017G016700.1.p locus=Potri.017G016700 ID=Potri.017G016700.1.v4.1 annot-version=v4.1 ATGACTTGGTGCAATGACTGCAACGATGTGCAAACAATTGAAAGAAGCTCACCTCCACCTTGTAATGCAAGTGTTATTGCTCAAAGACACAAAGAATGCT TGATTCGAAGTTGCCCTTCATGTGGGCACCAAATCAAATGCCAAGACCAGGCAAGAATCCATGACTTGCCAGGGCTACCGGCCGGAGTGAAGTTTGATCC GACTGATCAAGAGCTGCTTGAGCATTTGGAGGGGAAGGTGAAGTCTGATACCCGCAAGGTCCACCCTCTAATTGATGAGTTCATCCCTACAATCGATGGA GAGAATGGGATTTGCTATACACACCCAGAAAAGTTACCAGGGGTGAGCAAAGATGGGCTAATTCGCCACTTCTTCCATCGGCCATCAAAAGCATACACGA CTGGAACAAGAAAGAGAAGAAAGGTGCACACGGACACAGAAGGTGGTGAGACGAGATGGCACAAAACAGGCAAGACTAGACCGGTTCTTGTTGGTGGAAA AGTGAAAGGGTACAAGAAGATACTAGTGCTTTATACCAACTATGGGAAGCAAAGGAAGCCAGAGAAAACAAATTGGGTGATGCATCAATACCATCTTGGA AACAATGAAGAAGAGAAAGATGGAGAGCTTGTGGTTTCTAAAGTTTTCTACCAAACACAACCTAGACAATGTGGTTCTCTCATCAAGGATTCTGTTTCTG TTCCTTCAAAATTAAAGGTACAAAGTAGTGGGCATGAGGGCTCTAACCTTAAGAATAGTACCACTCTTGTTGAGTACTATCACCCTTCTTCTTTTATATC CTTTGACCAAAGTGGACAGAATAGATCAACAAACCCTAACCCTCCTCAACAGCTACTCTCCCATTTTGCAGTTCATGACGGATCTTCTTTTATCCCCTGA
AA sequence Show only first row Show all	>Potri.017G016700.1 pacid=42813497 polypeptide=Potri.017G016700.1.p locus=Potri.017G016700 ID=Potri.017G016700.1.v4.1 annot-version=v4.1 MTWCNDCNDVQTIERSSPPPCNASVIAQRHKECLIRSCPSCGHQIKCQDQARIHDLPGLPAGVKFDPTDQELLEHLEGKVKSDTRKVHPLIDEFIPTIDG ENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHTDTEGGETRWHKTGKTRPVLVGGKVKGYKKILVLYTNYGKQRKPEKTNWVMHQYHLG NNEEEKDGELVVSKVFYQTQPRQCGSLIKDSVSVPSKLKVQSSGHEGSNLKNSTTLVEYYHPSSFISFDQSGQNRSTNPNPPQQLLSHFAVHDGSSFIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.017G016700 [exp]	0	1
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Potri.012G016200 [exp]	1.00	0.9561
AT1G27920		MAP65-8	microtubule-associated protein...		Potri.003G173300 [exp]	2.00	0.9488
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.010G244900 [exp]	2.44	0.9518
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Potri.009G099800 [exp]	3.00	0.9496	CAM1
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.010G193100 [exp]	3.74	0.9315
AT2G03200			Eukaryotic aspartyl protease f...		Potri.019G002100 [exp]	4.47	0.9478
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Potri.014G029900 [exp]	6.00	0.9331
AT3G28850			Glutaredoxin family protein (....		Potri.017G081600 [exp]	6.55	0.9011
AT5G02970			alpha/beta-Hydrolases superfam...		Potri.006G131300 [exp]	7.21	0.8976
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.006G200300 [exp]	7.21	0.9328

Compare expression of checked genes

Potri.017G016700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.