Plant FIBer expression Database

Potri.017G016800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G46070 927 / 0 Guanylate-binding family protein (.1)
AT1G03830 289 / 2e-82 guanylate-binding family protein (.1.2)
AT2G38840 127 / 3e-30 Guanylate-binding family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G049400
[exp]
1038 / 0 AT5G46070 1334 / 0.0 Guanylate-binding family protein (.1)
Potri.011G058500
[exp]
1033 / 0 AT5G46070 1355 / 0.0 Guanylate-binding family protein (.1)
Potri.002G046000
[exp]
120 / 8e-28 AT2G38840 1011 / 0.0 Guanylate-binding family protein (.1)
Potri.005G168402
[exp]
105 / 4e-27 AT5G46070 116 / 5e-32 Guanylate-binding family protein (.1)
Potri.005G217300
[exp]
107 / 1e-23 AT2G38840 960 / 0.0 Guanylate-binding family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025456
[exp]
974 / 0 AT5G46070 1401 / 0.0 Guanylate-binding family protein (.1)
Lus10015327
[exp]
969 / 0 AT5G46070 1415 / 0.0 Guanylate-binding family protein (.1)
Lus10015390
[exp]
932 / 0 AT5G46070 1392 / 0.0 Guanylate-binding family protein (.1)
Lus10013965
[exp]
930 / 0 AT5G46070 1390 / 0.0 Guanylate-binding family protein (.1)
Lus10018638
[exp]
612 / 0 AT5G46070 526 / 2e-169 Guanylate-binding family protein (.1)
Lus10018755
[exp]
120 / 8e-28 AT2G38840 989 / 0.0 Guanylate-binding family protein (.1)
Lus10024841
[exp]
119 / 2e-27 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1)
Lus10014720
[exp]
113 / 1e-25 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1)
Lus10003085
[exp]
84 / 7e-18 AT2G38840 298 / 8e-99 Guanylate-binding family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF02263 GBP Guanylate-binding protein, N-terminal domain
CL0023 P-loop_NTPase PF02841 GBP_C Guanylate-binding protein, C-terminal domain
Representative CDS sequence
>Potri.017G016800.2 pacid=42814622 polypeptide=Potri.017G016800.2.p locus=Potri.017G016800 ID=Potri.017G016800.2.v4.1 annot-version=v4.1
ATGATGCAAAAGATGACAAACCCGGTCTCTTTCCCAGAAAAGGATAGCAACAACACCAACAATGCAGAGCCAAGCAATGCAGGAAGACCAATAAAGTTCA
TTTACTATGATGAAAGTGGCAAGTTTAAAGTGCACCCAGATGCCGTTGATGCTCTTATGCAAATTAAAGGACCCATTGGTGTTGTTTCTGTTTGTGGGCG
TGCAAGGCAGGGTAAAAGCTTCCTTTTGAACCAGCTTCTTGGTACGAGCACTGGATTTCAAGTTGGGTCAACCCATCGACCTTGCACTAAAGGGATTTGG
ATATGGAGTGAACCTTTGAAGAGAGCTGCATTGGATGGAACTGAATACAGTCTTGTACTGCTGGACTGTGAAGGGATTGATGCTTATGATCAAACAGGGA
CGTACAGCGCCCAGATATTCTCCTTGGCCATCCTCTTATCAAGTTTGTTTGTTTACAACCAGATGGGGGTTATAGATGAAGCTGCACTCGATTGTCTCTC
TCTGGTCTCTGAAATGACCAAGCATATTCATGTCAAAGCTTCTGGAGAAAAAGACACTGTCCCTGATCTTGGGCACTTCTCCCCTGTCTTTGTTTGGCTT
TTGAGGGACTTCTACTTGGATTTGAAAGAGGATAATACAAAAATAACACCCTGCAACTACCTAGAGCTGGCCTTGAGACCAGTGCTGGGTAGTGGAAAGG
ATGTAGCTGCTAGAAACAAGATTCGCGAGTCTATTCGAGCTCTTTTTCCAAATCGAGAGTGCTTTACTCTTGTCAGCCCTTTGAACAATGAAGCTGACCT
GCAACATCTTGATCGAGTTTTGCTGGACAAGTTTAGGCCAGAATTTCTATCGGGGCTCAATATGTTGGCAAAATTTGTTTTTGAAAGAACTAAGCCTAAG
CAAGTTGGAGGCACTGTTATGACAGGACCTATTCTTGCTGGTATTACAAAATCCTTTCTGGATGCTCTTAACAGAGGGGCTGTTCCTACAATATCTTCCT
CGTGGCAGAATGTAGAAGAATCAGAATGCCAAAAGGCATTCGATACAGCCATTGAAGTTTATATGTCTGCTTTTGATCGCACAAAGCCTGCTGATGAAGT
TTCCCTACAAGAAGTGCATGATGAAGCAGTTCAGAAGTCAATTTCTGTGTATAATGCTAGTGCTGTCGGAGTTGGTTCTGCTAGACAAAAATATGAAGTG
CTTCTTCAGAATTTCTGTAAAAAGGCATTTGAGGATTATAAAAGAAATGCATTTATAGAGGCAGATATACAATGTTTAAATGCTATACAAAACATGGAAC
GGAAGCTGAAAGCAGCTTGTCAAGTTGATGATGCACAAATTGAAAGAGTTGTCATAGTTCTTGATAGTCTTCTATCTGAGTATGAAGCATCAGTTCATGG
TCCAGCAAAATGGCAGAAGTTGTCATCCTTCTTACAACAGAGTTTGCAGGGTCCTATTCTCCATCATGCTAAGAAGTTGATTGATGAAGCTTCATCAGAC
AAAAATGTCCTTATCTTGAAATGCAGCTCAATGGAAGATAAGATGCAAATGCTTCATAAGAAGTTGGAAGCAAGTGAGAAATTCAAAACAGAATATCGAA
AGAGTTATGAAGATGCTATAAATGACTTGAATAAGGTCTCTGAATGTTACAAGAGCCGTATAACTGATCTGGAGAGGAAATGCAGCTCATTGGAGGAGAG
GTATTCTAGTTCACTTGAAATGCTGGATTCTGCAAAGCAGGAATCCTTGGAATGGAGGAGAAAATATGAAGAGACATGGAATAAGAAGGCAGTTAAAGAC
CAGGTTAAGGTGGGAACCATGTCGGGGGCTCATGAAGCAGAAGCAAGACTTGCTGCTTCTCATGGACAAACTCAGTTAGCATGGAAAAAGGCCGATGAAT
GGAAAGAGAAGTATGTTATTGCAGTTAATGAATTCAAGGCTAACATAGAGAAGGAAAATGTACTGCTGGAATATCCAATTGAGGATGTAAACTGCAGAGA
AGAAGCTCTGAGTGCTGAGTCATGCGATAGCTTGGCAGAAAAGCAGGACAATGAAATTAAGGTCAAGATAGCAAAGCTTGAGGAGGCTGAGCAGAAAATA
ACCACTTTGAATTTGGACTTGAAGGGTGCTCAAGAAAAGATGGACAAATATGAGTTGGAATTATCAGCTCTGAAGCTTCAACTCAAGAACTTGAGTGATA
AGTACGAGTCTGTCAAAACTGTTGCTCATGCATTGGAGATGCAAGCTCAGATACTGGTACAGGACAGAACCCAAATGGAGCAAAAGTACCTCACTGAGTC
AAAAAGGTTTGAGGAAGCTAATGAAAGGTGTAAAGTCACAGCAGAGGAAGTTAAGGTGGCAAATAAGTTTGTTGAAACAGCACAATCAGATGTACTGGCT
GCTCAAAATTCTAAGTGGGATGCTTCTCAGATTGCAATAGAAAGACTTGCCCAGATGGAAACTGCACAAAAGCAGATTGAAGACTTAGAGAGACAAAAGG
TGGATCTTACCAGTGAAGTTGACAGGTTGCGTATATCAGAAGTCAATGCTATATCTAGGGTCGCTTTACTAGAAGCTATGGTTAAAGAGAGAGATCAAGA
GTTAGAGGCATTGAAAATGAAATGCGAACAAAGATTAAGCTCAGTGCTAGGGGAAAATATAATGGCAAATGGGCCTTCTTTACATGCGGAACTGCAGCAG
AGAAAACTAGTTTCACCACAGGTGGAGTTATCTCCTGACCATTCAAACGAAACTGCATTGGGTTCTGAGATGAAAACCATTGCTTGGGGGAAACGTTCAA
GGCTGAAAGTTCTGAGTGCGGGTCAGGATTCTGTCCAGGATATGGATATTGATGAAGAAATAGCAAGGGAATCAAAAAAACCAAAAATGGCCCTGCAAAA
ATGCACGACAACAGAAGTTGAGAATTCTGATGTCAAGGCTAATGAAGACAGTGAAGATCGAAAGGCTGGTTCAAGGTCCTATGTTAGGTTAACCGTTCTG
AAGATGCAGCAGGAGCTCACTGAACTTGGTTTTGGTGGAGATTTGCTTGAGCTGAAGAGCTCCAAGAAGAAAGATGTCTATGCTCTATACAAAAGACTTG
TCCTGAAGAAGTAA
AA sequence
>Potri.017G016800.2 pacid=42814622 polypeptide=Potri.017G016800.2.p locus=Potri.017G016800 ID=Potri.017G016800.2.v4.1 annot-version=v4.1
MMQKMTNPVSFPEKDSNNTNNAEPSNAGRPIKFIYYDESGKFKVHPDAVDALMQIKGPIGVVSVCGRARQGKSFLLNQLLGTSTGFQVGSTHRPCTKGIW
IWSEPLKRAALDGTEYSLVLLDCEGIDAYDQTGTYSAQIFSLAILLSSLFVYNQMGVIDEAALDCLSLVSEMTKHIHVKASGEKDTVPDLGHFSPVFVWL
LRDFYLDLKEDNTKITPCNYLELALRPVLGSGKDVAARNKIRESIRALFPNRECFTLVSPLNNEADLQHLDRVLLDKFRPEFLSGLNMLAKFVFERTKPK
QVGGTVMTGPILAGITKSFLDALNRGAVPTISSSWQNVEESECQKAFDTAIEVYMSAFDRTKPADEVSLQEVHDEAVQKSISVYNASAVGVGSARQKYEV
LLQNFCKKAFEDYKRNAFIEADIQCLNAIQNMERKLKAACQVDDAQIERVVIVLDSLLSEYEASVHGPAKWQKLSSFLQQSLQGPILHHAKKLIDEASSD
KNVLILKCSSMEDKMQMLHKKLEASEKFKTEYRKSYEDAINDLNKVSECYKSRITDLERKCSSLEERYSSSLEMLDSAKQESLEWRRKYEETWNKKAVKD
QVKVGTMSGAHEAEARLAASHGQTQLAWKKADEWKEKYVIAVNEFKANIEKENVLLEYPIEDVNCREEALSAESCDSLAEKQDNEIKVKIAKLEEAEQKI
TTLNLDLKGAQEKMDKYELELSALKLQLKNLSDKYESVKTVAHALEMQAQILVQDRTQMEQKYLTESKRFEEANERCKVTAEEVKVANKFVETAQSDVLA
AQNSKWDASQIAIERLAQMETAQKQIEDLERQKVDLTSEVDRLRISEVNAISRVALLEAMVKERDQELEALKMKCEQRLSSVLGENIMANGPSLHAELQQ
RKLVSPQVELSPDHSNETALGSEMKTIAWGKRSRLKVLSAGQDSVQDMDIDEEIARESKKPKMALQKCTTTEVENSDVKANEDSEDRKAGSRSYVRLTVL
KMQQELTELGFGGDLLELKSSKKKDVYALYKRLVLKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G46070 Guanylate-binding family prote... Potri.017G016800
[exp]
0 1
AT2G39090 APC7, AtAPC7 anaphase-promoting complex 7, ... Potri.008G215100
[exp]
1.41 0.8629
AT3G21810 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.007G121700
[exp]
7.34 0.8524
AT4G27220 NB-ARC domain-containing disea... Potri.001G404875
[exp]
10.24 0.8178
AT3G01930 Major facilitator superfamily ... Potri.017G064201
[exp]
14.00 0.8431
Potri.012G030301
[exp]
15.29 0.8479
AT1G66730 AtLIG6 DNA LIGASE 6 (.1) Potri.004G094200
[exp]
15.68 0.8145
AT1G08390 unknown protein Potri.002G256001
[exp]
16.73 0.8100
AT5G40840 SYN2, ATRAD21.1 Sister chromatid cohesion 1 \(... Potri.017G067400
[exp]
20.00 0.8526 SYN2.1
AT4G17980 NAC ANAC071 NAC domain containing protein ... Potri.014G075901
[exp]
24.12 0.7915
AT4G11440 Mitochondrial substrate carrie... Potri.003G127600
[exp]
28.46 0.7811

Potri.017G016800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.