Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53980 80 / 3e-19 HD ATHB52 homeobox protein 52 (.1) AT2G18550 79 / 2e-18 HD HB-2, ATHB21 homeobox-2, homeobox protein 21 (.1) AT4G36740 79 / 3e-18 HD HB-5, ATHB40 homeobox protein 40 (.1) AT5G66700 72 / 2e-15 HD ATHB53, HB53, HB-8 HOMEOBOX-8, ARABIDOPSIS THALIANA HOMEOBOX 53, homeobox 53 (.1) AT3G01470 70 / 1e-14 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT1G69780 70 / 2e-14 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT1G27045 69 / 2e-14 ATHB54 homeobox protein 54, Homeobox-leucine zipper protein family (.1) AT1G26960 68 / 5e-14 HD ATHB23 homeobox protein 23 (.1) AT2G22800 66 / 3e-13 HD HAT9 Homeobox-leucine zipper protein family (.1) AT4G40060 66 / 3e-13 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G135100 [exp] 288 / 9e-101 AT5G53980 85 / 3e-21 homeobox protein 52 (.1) Potri.011G114500 [exp] 114 / 3e-32 AT5G53980 113 / 2e-32 homeobox protein 52 (.1) Potri.001G395100 [exp] 105 / 7e-29 AT5G53980 114 / 6e-33 homeobox protein 52 (.1) Potri.007G029500 [exp] 80 / 7e-19 AT4G36740 208 / 2e-68 homeobox protein 40 (.1) Potri.005G126100 [exp] 75 / 9e-17 AT2G18550 201 / 2e-65 homeobox-2, homeobox protein 21 (.1) Potri.008G194400 [exp] 76 / 2e-16 AT5G15150 122 / 1e-32 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.015G065400 [exp] 75 / 4e-16 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.012G070900 [exp] 74 / 5e-16 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.006G117700 [exp] 71 / 4e-15 AT5G03790 181 / 5e-57 LATE MERISTEM IDENTITY1, homeobox 51 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013103 [exp] 95 / 6e-24 AT5G53980 107 / 3e-29 homeobox protein 52 (.1) Lus10003492 [exp] 93 / 1e-23 AT5G53980 110 / 9e-31 homeobox protein 52 (.1) Lus10022225 [exp] 78 / 1e-17 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10008795 [exp] 78 / 2e-17 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10033102 [exp] 75 / 3e-16 AT3G01470 151 / 4e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036674 [exp] 74 / 6e-16 AT3G01470 153 / 8e-45 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10013277 [exp] 73 / 1e-15 AT3G01470 130 / 2e-36 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10042180 [exp] 73 / 2e-15 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10030800 [exp] 72 / 3e-15 AT3G01470 135 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10041719 [exp] 71 / 3e-15 AT4G36740 192 / 9e-62 homeobox protein 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Potri.017G016900.1 pacid=42814627 polypeptide=Potri.017G016900.1.p locus=Potri.017G016900 ID=Potri.017G016900.1.v4.1 annot-version=v4.1 ATGAATTCCCATTTACACCACCAGTCACAAAGCCAAGGCAACCGACCTCTCAAACCCAGAAAGAAAAGGCTTGCTAGAGACCAGCTTAACCTCCTGGAAA CAAGTTTCAATGCTAACCAGAAGCTCAAAGCAGAGCACAAGACTGAGCTTGCCCGCCAACTAGGCGTGCCACCAAAACAAGTTGCAATATGGTATCAAAA TAGAAGAGCCAGGCACAAAAATGATGCCATAGAGCATGACTACATGAACATCCAGCTAGAGCTAGGTAATGTATTGGCAGAAAACATCAGGCTCGAGAAA CAAGTCAGCATGCTTAAATTTGAGCTGAACAAGGTTCAACAAATGATACTTTTTGGACCAACCTCATCTGCTGCAACTCTCCCTTCAGTGTCAGGATCTA GTGATGAGCAGGCAAACTCAAGTTCTCCTGGAAACATGATCTGTAATTGGGGAGACGCTGGAAATGATGACATGTTTCCTGTAGAAGAGCTATATACTTG TTTGATAGGCTCTGACACTCAGTTATGGCCTCTTAACTGA
AA sequence Show only first row Show all	>Potri.017G016900.1 pacid=42814627 polypeptide=Potri.017G016900.1.p locus=Potri.017G016900 ID=Potri.017G016900.1.v4.1 annot-version=v4.1 MNSHLHHQSQSQGNRPLKPRKKRLARDQLNLLETSFNANQKLKAEHKTELARQLGVPPKQVAIWYQNRRARHKNDAIEHDYMNIQLELGNVLAENIRLEK QVSMLKFELNKVQQMILFGPTSSAATLPSVSGSSDEQANSSSPGNMICNWGDAGNDDMFPVEELYTCLIGSDTQLWPLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Potri.017G016900 [exp]	0	1
AT3G11590			unknown protein		Potri.009G160900 [exp]	2.44	0.8003
AT2G27830			unknown protein		Potri.004G188600 [exp]	4.00	0.7548
AT1G65920			Regulator of chromosome conden...		Potri.004G080900 [exp]	6.48	0.8233
AT1G25330	bHLH	HAF, bHLH075, C...	HALF FILLED, CESTA, basic heli...		Potri.017G115300 [exp]	8.36	0.7769
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.010G208600 [exp]	12.16	0.8131
AT1G65780			P-loop containing nucleoside t...		Potri.017G140300 [exp]	14.24	0.7908
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G026200 [exp]	22.44	0.7489
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Potri.009G041000 [exp]	24.16	0.7803
AT1G18400	bHLH	bHLH044, BEE1	BR enhanced expression 1 (.1)		Potri.004G099400 [exp]	27.65	0.7517
AT1G65780			P-loop containing nucleoside t...		Potri.017G140501 [exp]	28.53	0.7747

Compare expression of checked genes

Potri.017G016900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.