Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44170 315 / 1e-109 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G08125 127 / 2e-35 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT1G73320 91 / 9e-22 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G35987 56 / 5e-09 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G49560 52 / 7e-08 Putative methyltransferase family protein (.1) AT3G50850 50 / 3e-07 Putative methyltransferase family protein (.1) AT2G26810 48 / 1e-06 Putative methyltransferase family protein (.1.2.3) AT5G27400 47 / 4e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G27410 47 / 5e-06 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) AT2G26200 47 / 7e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G006800 [exp] 119 / 3e-32 AT1G08125 370 / 4e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.017G153900 [exp] 87 / 1e-20 AT1G73320 347 / 2e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G148200 [exp] 68 / 8e-14 AT5G44170 46 / 7e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G025600 [exp] 56 / 2e-09 AT5G49560 289 / 2e-98 Putative methyltransferase family protein (.1) Potri.007G057000 [exp] 56 / 4e-09 AT4G35987 410 / 5e-145 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.009G068400 [exp] 44 / 2e-05 AT2G26810 345 / 2e-121 Putative methyltransferase family protein (.1.2.3) Potri.006G100100 [exp] 40 / 0.0007 AT5G01470 338 / 4e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018640 [exp] 316 / 4e-110 AT5G44170 348 / 1e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10039876 [exp] 223 / 2e-74 AT5G44170 244 / 5e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10021425 [exp] 114 / 2e-30 AT1G08125 385 / 2e-135 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10039875 [exp] 101 / 6e-28 AT5G44170 102 / 6e-29 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031894 [exp] 83 / 1e-18 AT1G73320 362 / 1e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10016141 [exp] 69 / 1e-13 AT1G08125 183 / 7e-56 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10015166 [exp] 51 / 2e-07 AT5G27400 377 / 9e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014309 [exp] 46 / 9e-06 AT5G49560 283 / 1e-95 Putative methyltransferase family protein (.1) Lus10031516 [exp] 44 / 5e-05 AT5G27400 364 / 1e-125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF06325 [poplar] [flax] PrmA Ribosomal protein L11 methyltransferase (PrmA)
Representative CDS sequence Show only first row Show all	>Potri.017G017000.2 pacid=42813036 polypeptide=Potri.017G017000.2.p locus=Potri.017G017000 ID=Potri.017G017000.2.v4.1 annot-version=v4.1 ATGAAATTCACAGGCTCGCCTGGAATAGACCTCAAGATCAAAGACAAAACTCTGTCTCTCCAAGAAGACAACAGTTCCTTCCATGTGGGAACTTCAGTTT GGTCAGGTTCTTTAGTCCTCTCCAAATTTCTCGACCGGTGGACCCCACTGTCCACGAACCCCACCACCACCCCAAACCGTTACTCCACCCTCCTCGACTT CCACAACCGCCGTGCCATCGAGCTAGGCACCGGCTGTGGCGTCACTGGCATGGCCCTTTACCTTCTTGGACTCACTGACATTGTCCTTACTGACATCCAC CCTGTGATGCCTGCTTTGAAACACAACTTAAAGCGAAACAAACAAGTTCTTGGCAAGATGTTGAAGACAGCGATTCTTTATTGGAGTAATGAGGATCAAA TTAATGGGGTTAATCCCCCCTTTGATTATGTAATCGCGGCGGATGTTGTCTATATTGAAGAGAGTGTGGGGGCATTGGTGAAGGCCATGGAAATGTTGGT GAAAGATGATGGGGTTGTTTTGTTGGGGTATCAACTGAGATCACCGGAGGCGGATAAGTTGTTTTGGGAGATTTGTGGAGAGGCTTTTGTGATTGAGAAA GTTCCGAAAGAGGATTTGCATCCTGAGTATTGTTATGAGGAGACTGATGTGTTTATATTCAGGAAAAAGAAGAAGAATTTATGA
AA sequence Show only first row Show all	>Potri.017G017000.2 pacid=42813036 polypeptide=Potri.017G017000.2.p locus=Potri.017G017000 ID=Potri.017G017000.2.v4.1 annot-version=v4.1 MKFTGSPGIDLKIKDKTLSLQEDNSSFHVGTSVWSGSLVLSKFLDRWTPLSTNPTTTPNRYSTLLDFHNRRAIELGTGCGVTGMALYLLGLTDIVLTDIH PVMPALKHNLKRNKQVLGKMLKTAILYWSNEDQINGVNPPFDYVIAADVVYIEESVGALVKAMEMLVKDDGVVLLGYQLRSPEADKLFWEICGEAFVIEK VPKEDLHPEYCYEETDVFIFRKKKKNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44170			S-adenosyl-L-methionine-depend...		Potri.017G017000 [exp]	0	1
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Potri.013G153700 [exp]	1.73	0.7772
AT2G27470	CCAAT	NF-YB11	"nuclear factor Y, subunit B11...		Potri.009G163500 [exp]	4.47	0.6816
AT2G01640			unknown protein		Potri.009G097000 [exp]	5.29	0.7579
AT2G31670			Stress responsive alpha-beta b...		Potri.011G125701 [exp]	14.14	0.6293
AT5G27820			Ribosomal L18p/L5e family prot...		Potri.007G100900 [exp]	16.85	0.6969
AT3G22660			rRNA processing protein-relate...		Potri.015G131200 [exp]	18.54	0.6701
AT3G21860		ASK10	SKP1-like 10 (.1)		Potri.005G094800 [exp]	20.71	0.6596
AT1G12400			Nucleotide excision repair, TF...		Potri.001G116000 [exp]	22.97	0.6005
AT5G46160			Ribosomal protein L14p/L23e fa...		Potri.010G022800 [exp]	23.87	0.6801	RPL14.1
AT1G09320			agenet domain-containing prote...		Potri.013G006900 [exp]	26.26	0.6617

Compare expression of checked genes

Potri.017G017000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.