Plant FIBer expression Database

Potri.017G017200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G44150 137 / 2e-36 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018632
[exp]
167 / 2e-47 AT5G44150 202 / 6e-62 unknown protein
Lus10039868
[exp]
164 / 3e-46 AT5G44150 201 / 2e-61 unknown protein
Lus10005598
[exp]
106 / 1e-26 AT5G44150 124 / 2e-34 unknown protein
Lus10038027
[exp]
94 / 2e-21 AT5G44150 123 / 2e-33 unknown protein
Lus10011074
[exp]
59 / 2e-10 AT5G44150 84 / 1e-19 unknown protein
Lus10014193
[exp]
47 / 1e-06 AT5G44150 50 / 2e-08 unknown protein
Lus10035461
[exp]
0 / 1 AT5G44150 91 / 1e-23 unknown protein
PFAM info
Representative CDS sequence
>Potri.017G017200.1 pacid=42813000 polypeptide=Potri.017G017200.1.p locus=Potri.017G017200 ID=Potri.017G017200.1.v4.1 annot-version=v4.1
ATGGACACAAAAGCATTAGCAAAATCAAAGAGAGCACACACATTACAGCACAACAAGGGCAAAAAACCACACCCAAATCAAAACCCCAGCAAAACCCCAT
CAACTGGAAACAATCAAAAACCCCAAAAATCTAAGCTTCCATCCAACTGGGATCGGTATGAAGATGACGAGGAAGATGAATTTGGAGTGAATCTTGAAAA
CCCATCTGGAGATAACAGTAAAAAACCAAGCTTTAAGGATTATGGTGATGGTCTTGCTTTGCCAAAGAGTAAAGGTGCTGACTTTAAATACCTCCTTGAT
GAAGCTAAATCAAAACCTCACCAAGTTGACGACTTTCCTTTTCTCGAGGGCTTCTTGGCTGAGGAATCTATGCATGGAGTAGGTCCCTTGCTTGCAGTCA
GGGGAGAAAGCATTCTATCATGGATTGGGGATGATAATTTTGTTGTGGAAGATGAAACAACTTCAAGTCATGAGGCGTCATTTCTCTCCCTGAATTTGCA
TGCTCTTGCGGAACAACTAGCTAAAGTGGACGTATCAGAGAGGCTCTTCATTGAAGCAGATCTATTACCAACAGAATTGGGATCAAATACAAGCAGCAGC
CAGGAATTTGACCAAATGCAAACAACAGGATCAGAGGCAAGCAGCAATCATGGACCTAACAGAAAACAAACAACTCATGATAAAGAAACCAAGACAATCT
CTGGAGAATTGACTTTTGAAGATTTTTCTGAGAAGAATAAGGCTGTTAATCAAGATGCCGAGATTTTTGTATCAGGGTTGACCATAGGCAACTCAGACCC
AATTTCATTTATTCAGGGATTAGATGTTAAGGATAATTTGAATTTAAATCAGCATGGTAAATCCAATCAAAGAACAGCTATGGAATCCCCAGCACAGTTC
TATGCGAGTTCTGTTGCCCCTAACAGCAGGCTGCCCACGTTCGAAGCAGCAGCTGCTGAGTCTGAATTGGATATGCTTCTTGACTCACTTAGCGAGGCCA
AGCTACTTGATTCTTCTGGATTTGGGTCAGGTACTTTACCTGTTTCAGAGAAAGAGGCTGCTGTACCTCTGCCACAACTTACAAGAAATGCCCCTGGTTC
AGCAAAAACCACTCCCACTGCTGCCACCCTGGACAACGTGCTTGATGATTTACTTGAGGAAACATCTAATTTACAAGAGGCTGCTGCACCATTGCCACTA
CTTGCAAGAAATGCCCACGGTTCTTTGAAAACCACTTCTACTGCTGCCACTCTAGATGACGTGCTTGATGATTTATTTGAGGAAACATCTAGCTTGTCAA
ACCAAAACAATTTGCATCAGCCTTCAGAAAAGAAGGCTGATCACGTAATTCAATCTTCTTCGTCTCAGTCTGTCAACAAGTCAAAAGTTTTGGATGATTT
TGACTCATGGTTAGATACAATTTAG
AA sequence
>Potri.017G017200.1 pacid=42813000 polypeptide=Potri.017G017200.1.p locus=Potri.017G017200 ID=Potri.017G017200.1.v4.1 annot-version=v4.1
MDTKALAKSKRAHTLQHNKGKKPHPNQNPSKTPSTGNNQKPQKSKLPSNWDRYEDDEEDEFGVNLENPSGDNSKKPSFKDYGDGLALPKSKGADFKYLLD
EAKSKPHQVDDFPFLEGFLAEESMHGVGPLLAVRGESILSWIGDDNFVVEDETTSSHEASFLSLNLHALAEQLAKVDVSERLFIEADLLPTELGSNTSSS
QEFDQMQTTGSEASSNHGPNRKQTTHDKETKTISGELTFEDFSEKNKAVNQDAEIFVSGLTIGNSDPISFIQGLDVKDNLNLNQHGKSNQRTAMESPAQF
YASSVAPNSRLPTFEAAAAESELDMLLDSLSEAKLLDSSGFGSGTLPVSEKEAAVPLPQLTRNAPGSAKTTPTAATLDNVLDDLLEETSNLQEAAAPLPL
LARNAHGSLKTTSTAATLDDVLDDLFEETSSLSNQNNLHQPSEKKADHVIQSSSSQSVNKSKVLDDFDSWLDTI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G44150 unknown protein Potri.017G017200
[exp]
0 1
AT4G30480 TPR1, AtTPR1 tetratricopeptide repeat 1, Te... Potri.018G100700
[exp]
24.06 0.6843
AT4G10925 Nuclear transport factor 2 (NT... Potri.001G089600
[exp]
44.49 0.6395
AT3G24860 Trihelix Homeodomain-like superfamily p... Potri.002G243300
[exp]
45.98 0.6166
AT5G40690 unknown protein Potri.001G338100
[exp]
48.21 0.6371
AT2G38340 AP2_ERF DREB2E, DREB19 dehydration response element-b... Potri.006G104200
[exp]
52.09 0.6155 Pt-DREB2.5
AT1G79510 Uncharacterized conserved prot... Potri.008G083400
[exp]
60.56 0.6565
AT2G15910 CSL zinc finger domain-contain... Potri.009G109100
[exp]
66.03 0.6194
AT1G18580 GAUT11 galacturonosyltransferase 11 (... Potri.015G060800
[exp]
67.62 0.5391
AT1G14060 GCK domain-containing protein ... Potri.013G099100
[exp]
70.00 0.5878
AT2G21860 violaxanthin de-epoxidase-rela... Potri.005G085800
[exp]
74.56 0.6451

Potri.017G017200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.