Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43560 281 / 2e-96 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G45680 80 / 5e-18 ATFKBP13 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) AT4G39710 77 / 8e-17 PnsL4, FKBP16-2 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) AT5G05420 62 / 4e-12 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G60370 64 / 7e-12 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25230 64 / 1e-11 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT5G48580 60 / 3e-11 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 (.1) AT5G48570 62 / 7e-11 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25220 57 / 4e-10 FKBP15-1 FK506-binding protein 15 kD-1 (.1) AT3G10060 57 / 1e-09 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G134600 [exp] 387 / 5e-138 AT2G43560 286 / 2e-98 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G079700 [exp] 74 / 6e-16 AT4G39710 243 / 1e-81 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Potri.001G075500 [exp] 73 / 2e-15 AT5G45680 253 / 7e-86 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Potri.012G129200 [exp] 72 / 2e-14 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2) Potri.014G149400 [exp] 71 / 6e-14 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G045600 [exp] 66 / 8e-13 AT3G60370 302 / 3e-104 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248300 [exp] 66 / 5e-12 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.015G130900 [exp] 63 / 2e-11 AT4G25340 204 / 1e-59 FK506 BINDING PROTEIN 53 (.1.2) Potri.016G096600 [exp] 61 / 5e-11 AT3G10060 272 / 6e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027115 [exp] 284 / 2e-96 AT2G43560 276 / 5e-94 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10008359 [exp] 281 / 3e-96 AT2G43560 273 / 1e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10006949 [exp] 81 / 2e-18 AT5G45680 244 / 2e-82 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10024735 [exp] 73 / 8e-16 AT5G45680 194 / 1e-63 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10042897 [exp] 72 / 5e-15 AT3G60370 312 / 8e-109 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10016811 [exp] 72 / 6e-15 AT4G39710 271 / 5e-93 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Lus10022507 [exp] 72 / 7e-15 AT4G39710 270 / 8e-93 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Lus10028194 [exp] 69 / 1e-13 AT3G60370 305 / 2e-104 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10003170 [exp] 65 / 5e-13 AT3G25220 226 / 4e-77 FK506-binding protein 15 kD-1 (.1) Lus10035560 [exp] 66 / 1e-12 AT3G10060 296 / 2e-102 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [poplar] [flax] FKBP PF00254 [poplar] [flax] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Potri.017G017500.1 pacid=42813335 polypeptide=Potri.017G017500.1.p locus=Potri.017G017500 ID=Potri.017G017500.1.v4.1 annot-version=v4.1 ATGGCTTCTTCTTCTTCTTCTCCTTCATCTCTTCTGCTCCCACTTGGTTCATCTTCTGGCAAAACTACTCTACTTACCAAAAGACATGGCATTGTCAATG TCTTTGACAAAGTCCAAGGTTTGATGAACATTAGTGTGCAATGCTCAAACTTGGAACCAAGAAGTAGAGGTTCAAGAGCAAGAGAGAAGAAGGTGGATAC AAGTTTGATTAAGAGAAGGGATTGTGTAATTGGGCTGGTATTTGGGGTTTCAACTCTTTGTAATATAGGCTCATTTGATAATGTTGCCAAAGGAGCTGGA TTGCCACCAGAAGATAAGCCAAGATTGTGTGATGAAACCTGTGAGAAAGAGCTAGAAAATGTGCCAATGGTGACTACAGAGTCTGGGTTGCAGTTCAAGG ACATTAAAGTTGGTCAAGGCCCTAGTCCTCCAGTTGGTTTTCAGGTTGCTGCTAATTATGTTGCCATGGTTCCATCTGGGCAAATATTTGACAGTTCATT GGAGAAAGCGCAGATCTATATCTTTCGTGTTGGCTCCGGTCTGGTGATCAAGGGACTTGATGAAGGGATCCTAAGCATGAAAGTTGGAGGGAAGCGCCGG CTCTACATTCCCGGACCGCTGGCATTCCCAAAAGGACTCACTTCAGCTCCAGGAAGGCCAAGGGTGGCACCAAATAGTCCTGTAGTTTTCGATGTCAGTT TGGAATACATACCAGGCCTTGAAGTGGAGGAAGAATGA
AA sequence Show only first row Show all	>Potri.017G017500.1 pacid=42813335 polypeptide=Potri.017G017500.1.p locus=Potri.017G017500 ID=Potri.017G017500.1.v4.1 annot-version=v4.1 MASSSSSPSSLLLPLGSSSGKTTLLTKRHGIVNVFDKVQGLMNISVQCSNLEPRSRGSRAREKKVDTSLIKRRDCVIGLVFGVSTLCNIGSFDNVAKGAG LPPEDKPRLCDETCEKELENVPMVTTESGLQFKDIKVGQGPSPPVGFQVAANYVAMVPSGQIFDSSLEKAQIYIFRVGSGLVIKGLDEGILSMKVGGKRR LYIPGPLAFPKGLTSAPGRPRVAPNSPVVFDVSLEYIPGLEVEEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Potri.017G017500 [exp]	0	1
AT5G02160			unknown protein		Potri.006G087701 [exp]	1.41	0.9758
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Potri.011G031300 [exp]	3.46	0.9742	Pt-PSBQ2.2
AT1G30380		PSAK	photosystem I subunit K (.1)		Potri.018G027600 [exp]	6.00	0.9741	Pt-PSAK.1
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.015G065600 [exp]	8.00	0.9616
AT2G30570		PSBW	photosystem II reaction center...		Potri.002G044300 [exp]	8.36	0.9679
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Potri.014G066700 [exp]	10.58	0.9498	Pt-AFO.1
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.006G144100 [exp]	11.48	0.9678
AT4G15510			Photosystem II reaction center...		Potri.013G006500 [exp]	12.64	0.9478
AT1G74730			Protein of unknown function (D...		Potri.012G070600 [exp]	13.74	0.9624
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Potri.001G403300 [exp]	16.73	0.9416	PORA.2

Compare expression of checked genes

Potri.017G017500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.