Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MYB.40,MYB175
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17950 244 / 2e-81 MYB AtMYB52, BW52, MYB52 myb domain protein 52 (.1) AT1G73410 231 / 1e-76 MYB AtMYB54, BW54, MYB54 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54, myb domain protein 54 (.1) AT1G69560 195 / 4e-61 MYB LOF2, ATMYB105 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) AT1G26780 184 / 2e-57 MYB LOF1, ATMYB117 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2) AT5G17800 174 / 5e-53 MYB ATMYB56 myb domain protein 56 (.1) AT4G33450 170 / 1e-52 MYB ATMYB69 myb domain protein 69 (.1) AT3G29020 169 / 2e-52 MYB ATMYB110 myb domain protein 110 (.1.2) AT2G39880 135 / 8e-38 MYB ATMYB25 myb domain protein 25 (.1) AT5G39700 130 / 2e-37 MYB ATMYB89 myb domain protein 89 (.1) AT3G50060 130 / 2e-36 MYB ATMYB77 myb domain protein 77 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G134500 [exp] 392 / 4e-140 AT1G17950 246 / 5e-82 myb domain protein 52 (.1) Potri.012G039400 [exp] 306 / 6e-106 AT1G17950 267 / 1e-90 myb domain protein 52 (.1) Potri.015G033600 [exp] 298 / 4e-103 AT1G17950 254 / 1e-85 myb domain protein 52 (.1) Potri.008G088000 [exp] 196 / 2e-60 AT1G69560 229 / 2e-71 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.005G186400 [exp] 193 / 2e-60 AT1G17950 197 / 1e-61 myb domain protein 52 (.1) Potri.002G073500 [exp] 191 / 1e-59 AT1G17950 202 / 9e-64 myb domain protein 52 (.1) Potri.007G106100 [exp] 189 / 1e-59 AT4G33450 207 / 2e-66 myb domain protein 69 (.1) Potri.010G167500 [exp] 191 / 3e-58 AT1G69560 237 / 8e-75 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.017G085200 [exp] 190 / 3e-58 AT1G69560 215 / 2e-66 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031900 [exp] 206 / 6e-65 AT1G17950 220 / 2e-70 myb domain protein 52 (.1) Lus10031326 [exp] 201 / 3e-63 AT1G17950 219 / 3e-70 myb domain protein 52 (.1) Lus10029746 [exp] 192 / 4e-60 AT1G17950 199 / 1e-62 myb domain protein 52 (.1) Lus10018936 [exp] 190 / 1e-59 AT1G69560 206 / 6e-65 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10028638 [exp] 189 / 2e-59 AT1G17950 206 / 7e-66 myb domain protein 52 (.1) Lus10026611 [exp] 186 / 6e-57 AT1G69560 238 / 5e-76 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10030452 [exp] 185 / 7e-57 AT1G69560 240 / 6e-77 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10005683 [exp] 176 / 5e-54 AT5G17800 212 / 1e-66 myb domain protein 56 (.1) Lus10040239 [exp] 135 / 3e-37 AT3G55730 315 / 1e-104 myb domain protein 109 (.1) Lus10028250 [exp] 134 / 9e-37 AT3G55730 306 / 2e-101 myb domain protein 109 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13921 [poplar] [flax] Myb_DNA-bind_6 Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.017G017600.1 pacid=42813938 polypeptide=Potri.017G017600.1.p locus=Potri.017G017600 ID=Potri.017G017600.1.v4.1 annot-version=v4.1 ATGAGTACCAGAGGCCATTGGAGGCCGGCTGAAGATGAGAAGCTTCGCAAGTTGGTGGATCAGTATGGTCCTCACAATTGGAACTCCATAGCCGAAAAGC TTCAAGGAAAATCAGGGAAGAGTTGTAGGTTAAGATGGTTTAATCAGTTGGATCCAAGAATCAACAGAAGCCCTTTTACAGAAGAGGAAGAAGAGAGGCT CCTTGCTTGTCAGCAGATTCATGGCAATAAATGGGCTGTTATTGCAAAGCAATTTCCTGGTCGTACTGATAATGCTGTGAAGAACCATTGGCATATAATC ATGGCAAGAAAATGCAGAGAAAGATCAAGGATTCATGCAAAAAGAGCAGCTTCTCAAGCGTTGTTAGTCAATGAGCAGACACATTCTTTCTCAAATCAAG ACGTGATGAGGATCGTGAATTGTGAGCCAAGGAACCTTGCCCCATCATTTTTCCACAAATTCTGTGAAAGTTATTGCGATTGTTATCATCGTCCCTTCTG TCTCAACTATCCGACGTCTTTTTGCAATGAAAATACCAGCCATCATGAAGGTAAACCTCTAGAGTTCTATGATTTTCTCCAAGTAAAGACTGATTCTAGC AAAAGCGAAGCCCTCGACAATGCTAGAAGAGATGATGTTGAGGTAGATCAGGAAGCCAGGGAATTACATCAGAGAAAGGCTAATTTTCCTTTCATTGATT TTTTGTCTGCTGGAAACTCTAATTAG
AA sequence Show only first row Show all	>Potri.017G017600.1 pacid=42813938 polypeptide=Potri.017G017600.1.p locus=Potri.017G017600 ID=Potri.017G017600.1.v4.1 annot-version=v4.1 MSTRGHWRPAEDEKLRKLVDQYGPHNWNSIAEKLQGKSGKSCRLRWFNQLDPRINRSPFTEEEEERLLACQQIHGNKWAVIAKQFPGRTDNAVKNHWHII MARKCRERSRIHAKRAASQALLVNEQTHSFSNQDVMRIVNCEPRNLAPSFFHKFCESYCDCYHRPFCLNYPTSFCNENTSHHEGKPLEFYDFLQVKTDSS KSEALDNARRDDVEVDQEARELHQRKANFPFIDFLSAGNSN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Potri.017G017600 [exp]	0	1	Pt-MYB.40,MYB175
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.001G302400 [exp]	5.29	0.9421
AT3G52710			unknown protein		Potri.006G212800 [exp]	8.00	0.9370
AT5G06490			RING/U-box superfamily protein...		Potri.010G243500 [exp]	9.27	0.9411
AT1G76500	AT-hook	SOB3, AHL29	SUPPRESSOR OF PHYB-4#3, AT-hoo...		Potri.005G257200 [exp]	14.42	0.9264
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.006G123400 [exp]	15.65	0.9334
AT5G06800	GARP		myb-like HTH transcriptional r...		Potri.001G228500 [exp]	17.49	0.9248
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Potri.007G114525 [exp]	20.24	0.9223
AT5G07475			Cupredoxin superfamily protein...		Potri.003G150300 [exp]	22.44	0.9298
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Potri.009G076100 [exp]	22.62	0.8901
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Potri.001G101000 [exp]	24.59	0.8939

Compare expression of checked genes

Potri.017G017600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.