Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04885 194 / 3e-53 PCFS4 PCF11P-similar protein 4 (.1) AT5G43620 159 / 6e-43 Pre-mRNA cleavage complex II (.1) AT1G66500 157 / 3e-42 C2H2ZnF Pre-mRNA cleavage complex II (.1) AT2G36480 103 / 9e-23 ENTH/VHS family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G134000 [exp] 558 / 0 AT4G04885 101 / 2e-22 PCF11P-similar protein 4 (.1) Potri.004G020300 [exp] 189 / 6e-51 AT4G04885 386 / 9e-120 PCF11P-similar protein 4 (.1) Potri.011G024800 [exp] 185 / 1e-49 AT4G04885 364 / 1e-111 PCF11P-similar protein 4 (.1) Potri.006G115600 [exp] 91 / 8e-19 AT2G36480 268 / 3e-76 ENTH/VHS family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006766 [exp] 192 / 2e-52 AT4G04885 650 / 0.0 PCF11P-similar protein 4 (.1) Lus10020058 [exp] 186 / 3e-50 AT4G04885 633 / 0.0 PCF11P-similar protein 4 (.1) Lus10018357 [exp] 179 / 1e-47 AT4G04885 653 / 0.0 PCF11P-similar protein 4 (.1) Lus10007652 [exp] 176 / 1e-46 AT4G04885 343 / 1e-104 PCF11P-similar protein 4 (.1) Lus10023867 [exp] 102 / 2e-22 AT2G36480 246 / 2e-68 ENTH/VHS family protein (.1.2.3) Lus10027715 [exp] 93 / 3e-19 AT2G36480 363 / 2e-110 ENTH/VHS family protein (.1.2.3) Lus10035573 [exp] 89 / 5e-18 AT2G36480 362 / 4e-110 ENTH/VHS family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G017800.3 pacid=42813095 polypeptide=Potri.017G017800.3.p locus=Potri.017G017800 ID=Potri.017G017800.3.v4.1 annot-version=v4.1 ATGGCTACAACACTAATAACAAGGAAAGATCATCATCGCCCTAGGGCAGTGCCTAATCTGCACAATCCAGTTCTTGATTCTGAAAAGAGATCAAGAACAA GTTACATGGCACAGCAGCAACAAGGTGGAGACTATTATCATCGTAATCAACTAGGGCTTCAAGCCAAGAAACCGAGGGTTGATCGTTTTAATAATAATGA GGCTGTCAATTTCGGTCCAAAGATTCAATCTTTTCCGCAGTTTGAGGGCAAGAAGGTGGAGATTAATTATGGGGTTTCTGGTTTCGATGCTAGGGTTCAA GCCCGTGAGCCAGAGTTGAGTAATAATGGGGTTTTGACACCAAATTTCCGGCCTTTGCCACAACTTCAAGATCAGAAAGCAGAGGGGAATAATGGGTTTT TTATGCCAAGTTTGCAAGCTTGGAAGCCTGAGGGTAATAATTTTGTGGTTTCAAGGCCGTATCCTCCACTTTCGCAGCCATTTCAAGGCAAGAAGCTAGG GTTTTATAATGGGTTTTCAGTGCCAAATTATCAAGTTTCTCGACATTTTCAAGACAGTAGTTTGAAGGTTGATAATGCGGTTTTCAATCCAAATCATGCT ATGCAGCAGGATCAAGAGAAGAAGTCAGAGGTTAACAAGGGGGGTTTTATGCCGAACCTTAATTTGTTTAGTTCAAAGTCACTAGGAGGCCCTTTGTATT CAATGCCAAATCCTGCCATTGTAAAGCCCATGTTGAATCAAAATGTAACTAACATGTGTTTGCTGAATTCACAATCACATAGTTCTCTTGCGTCTTCTGG TTTGTTAACAAGCTCTTCTTTTGTGCTTTCTAATTCTTTGAATGATGTTAAAAATATGTATATTAATTCAGCTCCACTGCATTCTGGTTTCTTAACAAAT TCTGTGTTGTGTAATAATGCAGTTAATAAAAATGGGGGTTTCACTCCAAATCCCCCAGTTATGCAGCTTAATTTGGTGAATCTGAGCGCTACAAACATGC CTTTGAATTCACAGGCTCAAGTAGCCTCTTGCTATTCTGATTTGCTAACCACTTTGGTTGGCAATGGAGTAGTTTCTTTGGCTAAACATGAAGTCCAAAG TAATAATGCAAATAGTTGCAAATTCAATTGTGCACCAAAGTTGCTGGAAACCAGCAACCAACTTGTGGCTAATGGATGTCCTGGTTTGAGAAATTCACTC ATGAGTTCCTTGATTAAAAAGGAAGATGATTTTAGGGGTGGTGTTGTATTTGATGCAAACCAACTTAAGGTGAGGCATGAATCTGTGATTAGATCCTTGT ATGCTGATATGCCAAGACAATGCTCCACATGTGGAATCAGATTCAAGTTCCAAGAAGATCATAGCAAGCATATGGATTGGCATGTGATTAAAAAACGGAC AATCAAGATATCTAAGCAGAGAAGCATTTCTCGTATGTGGTTGGATGGTGTAGATATGTGGCTGGCTGCTAGGGCAGATGTTGCTGCAGTTCCTGGATTT GCAAAAGCTGATGCTCCTGTAGAGAAGGAAAAAGAAGAAGATTGGATGAGTTCCACTGATGAAAACAAAGTATGTGCCTTGTGTCGAGAACCATTTGAAG AATTCTACAGCCACGAGGCTGATGACTGGATATTCAGAGGAGCTGTCTACCTGAACGCGGAAAAGAAATCAGCAGCTGAAAGCATGGATAGGAGTCGATT AGGTCCTGCTGTGCATGCCAAGTGCAGGCCAGCGTCCAAGTAG
AA sequence Show only first row Show all	>Potri.017G017800.3 pacid=42813095 polypeptide=Potri.017G017800.3.p locus=Potri.017G017800 ID=Potri.017G017800.3.v4.1 annot-version=v4.1 MATTLITRKDHHRPRAVPNLHNPVLDSEKRSRTSYMAQQQQGGDYYHRNQLGLQAKKPRVDRFNNNEAVNFGPKIQSFPQFEGKKVEINYGVSGFDARVQ AREPELSNNGVLTPNFRPLPQLQDQKAEGNNGFFMPSLQAWKPEGNNFVVSRPYPPLSQPFQGKKLGFYNGFSVPNYQVSRHFQDSSLKVDNAVFNPNHA MQQDQEKKSEVNKGGFMPNLNLFSSKSLGGPLYSMPNPAIVKPMLNQNVTNMCLLNSQSHSSLASSGLLTSSSFVLSNSLNDVKNMYINSAPLHSGFLTN SVLCNNAVNKNGGFTPNPPVMQLNLVNLSATNMPLNSQAQVASCYSDLLTTLVGNGVVSLAKHEVQSNNANSCKFNCAPKLLETSNQLVANGCPGLRNSL MSSLIKKEDDFRGGVVFDANQLKVRHESVIRSLYADMPRQCSTCGIRFKFQEDHSKHMDWHVIKKRTIKISKQRSISRMWLDGVDMWLAARADVAAVPGF AKADAPVEKEKEEDWMSSTDENKVCALCREPFEEFYSHEADDWIFRGAVYLNAEKKSAAESMDRSRLGPAVHAKCRPASK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.017G017800 [exp]	0	1
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Potri.010G043800 [exp]	2.00	0.8804
AT1G44130			Eukaryotic aspartyl protease f...		Potri.002G081400 [exp]	2.44	0.8444
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.007G043800 [exp]	3.16	0.8446
					Potri.018G013850 [exp]	4.47	0.8374
AT3G19330			Protein of unknown function (D...		Potri.010G240200 [exp]	4.47	0.8717
AT4G02350		SEC15B	exocyst complex component sec1...		Potri.002G203200 [exp]	4.69	0.8142
AT4G36988		CPuORF49	conserved peptide upstream ope...		Potri.007G043850 [exp]	5.29	0.8412
AT1G03910			unknown protein		Potri.006G118700 [exp]	6.92	0.8482
AT4G32285			ENTH/ANTH/VHS superfamily prot...		Potri.018G128200 [exp]	8.24	0.8055
AT3G02890			RING/FYVE/PHD zinc finger supe...		Potri.003G091000 [exp]	8.48	0.8136

Compare expression of checked genes

Potri.017G017800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.