Plant FIBer expression Database

Potri.017G017901 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G62270 240 / 3e-76 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G133900
[exp]
293 / 1e-96 AT5G62270 365 / 3e-124 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034311
[exp]
287 / 1e-94 AT5G62270 447 / 3e-157 unknown protein
Lus10021682
[exp]
278 / 2e-91 AT5G62270 425 / 7e-149 unknown protein
Lus10035022
[exp]
275 / 4e-90 AT5G62270 425 / 6e-149 unknown protein
Lus10012838
[exp]
43 / 0.0002 AT2G02880 346 / 4e-119 mucin-related (.1)
Lus10030486
[exp]
43 / 0.0003 AT2G02880 347 / 7e-120 mucin-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF12298 Bot1p Eukaryotic mitochondrial regulator protein
Representative CDS sequence
>Potri.017G017901.1 pacid=42814117 polypeptide=Potri.017G017901.1.p locus=Potri.017G017901 ID=Potri.017G017901.1.v4.1 annot-version=v4.1
ATGATTCTCATCACTTTTGAAAATGCCAAAGGGGTTGCATTAACAAATGGGATTGATACTTTTCAAGTGATTGGGTCTAGGTTCATCTCAGTGAATTCAG
GAGGAAGTGACAGTGAAGATGATTGGGATAGTGCAGTTGGTGGAACTTTTGGAGAGTCTGGTAGGGAGAGTGATGATCTGGGTTGGGACTCTGCTTCGTC
ATGGTCAACTGGATTGACTAAGGATCATTTTGATGGAGTGGCATCGATTGAAGATAGGATACATGAATTGGAGGCTGAGAATAAAAGGAGTGAGGCCATT
TTGAAAGGATGGGATAGGAGGATTGACGAACTTAGTGTGTTGATGAAGCAAATAAGGGAGCCTGGTGCAGGAGGTTCTTACTTGAAGGACTCGGAGAAGT
CAGAGATGTATCGGTTGCATAAGGAGATTCCTGGAGTTTACACTGTTGAGACTCTTGCTAAGGATTACAGTATTATGAGGCAAAGGGTGCATGCAATTCT
TTGGTTGAAAGAGATTGAGGAGAAAGAGGAGAAGAAGCTTGGTCATCCTTTGGATGTTTCTACCGAACTCTTGCTTGATAACTTCGCAGAAACATGGTGT
CTCTATACTTTGCATGGATTTATTTTATGTTTGTCCAAGGATACTCTGATGCACATTCTGGTGATCAAAACAGCAGCACACAAAGCAGAACTAAACAGAG
AGAATCGATTGAGTCTAACAATGGGAACAGGGGTGATAAAGCTAAGGATTTTGCTGAGTCAAATTCCACTTCCCTGTAAGCCTGATTTCAAAGTGATGTC
AGAGGCCTGTTGTGGTACCATCAAAGATCTAGATGGAGTCCACTATGAGATATCCAAGGAGGATGAGATGCTTTATCAAGAATATGTTCAGAAAATGAAC
TTCAACAAAATGAAACAGCGGCGTCCTTCTGAGGGTTGGAAGTTCACAGTGGAGAAACTGGGGGAAAAAGGGAGGCGTGGTGGTGGTGGCTGGAAGTCTG
TGAGCTTGCCTGATGGGCCCAGCTGGCCACTGGATGAGAGCAAGAAAATGTATGTTAGACGAGAAATTCCTCGCCGCAGACACAAGATTGTGCCATGA
AA sequence
>Potri.017G017901.1 pacid=42814117 polypeptide=Potri.017G017901.1.p locus=Potri.017G017901 ID=Potri.017G017901.1.v4.1 annot-version=v4.1
MILITFENAKGVALTNGIDTFQVIGSRFISVNSGGSDSEDDWDSAVGGTFGESGRESDDLGWDSASSWSTGLTKDHFDGVASIEDRIHELEAENKRSEAI
LKGWDRRIDELSVLMKQIREPGAGGSYLKDSEKSEMYRLHKEIPGVYTVETLAKDYSIMRQRVHAILWLKEIEEKEEKKLGHPLDVSTELLLDNFAETWC
LYTLHGFILCLSKDTLMHILVIKTAAHKAELNRENRLSLTMGTGVIKLRILLSQIPLPCKPDFKVMSEACCGTIKDLDGVHYEISKEDEMLYQEYVQKMN
FNKMKQRRPSEGWKFTVEKLGEKGRRGGGGWKSVSLPDGPSWPLDESKKMYVRREIPRRRHKIVP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G62270 unknown protein Potri.017G017901
[exp]
0 1
AT2G26000 BRIZ2 BRAP2 RING ZnF UBP domain-cont... Potri.007G063900
[exp]
6.24 0.7669
AT4G27220 NB-ARC domain-containing disea... Potri.001G426660
[exp]
6.32 0.8142
AT4G38180 FAR1_related FRS5 FAR1-related sequence 5 (.1) Potri.017G091000
[exp]
6.48 0.7525
AT1G68890 magnesium ion binding;thiamin ... Potri.010G135500
[exp]
8.48 0.7927
AT1G01790 ATKEA1, KEA1 K+ efflux antiporter 1, K+ EFF... Potri.002G157200
[exp]
8.94 0.8390
AT1G78810 unknown protein Potri.011G109600
[exp]
11.66 0.7794
AT5G26570 ATGWD3, OK1, PW... PHOSPHOGLUCAN WATER DIKINASE, ... Potri.002G234500
[exp]
16.27 0.7934
AT3G06400 CHR11 chromatin-remodeling protein 1... Potri.008G205600
[exp]
17.66 0.7120
Potri.001G293001
[exp]
18.02 0.7055
AT1G29260 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin... Potri.011G066600
[exp]
21.49 0.7255

Potri.017G017901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.