Plant FIBer expression Database

Potri.017G018000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G30700 613 / 0 unknown protein
AT1G61900 279 / 2e-89 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G133800
[exp]
840 / 0 AT2G30700 608 / 0.0 unknown protein
Potri.007G133733
[exp]
405 / 1e-141 AT2G30700 298 / 9e-100 unknown protein
Potri.004G016000
[exp]
296 / 2e-95 AT1G61900 524 / 0.0 unknown protein
Potri.011G003000
[exp]
289 / 6e-93 AT1G61900 521 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020048
[exp]
285 / 3e-92 AT1G61900 479 / 5e-169 unknown protein
Lus10006773
[exp]
276 / 1e-88 AT1G61900 445 / 1e-155 unknown protein
PFAM info
Representative CDS sequence
>Potri.017G018000.2 pacid=42814429 polypeptide=Potri.017G018000.2.p locus=Potri.017G018000 ID=Potri.017G018000.2.v4.1 annot-version=v4.1
ATGGAGGGTTTCCAGACTATCAGTTGTCTAAAGGGTTCACTAGGCCATCAGTTCTTGTTATTTATTGTTTGGTTATCCAGTTTCCAAGTAGCTGTGGCAC
TGCAGACCCTGCTTGAGCCTAATCATGTTTCGTCTACATCTGAGCTGGGCACTCCACCTATTTCTGGACTTTTTGGACCCATTGAAATATCACCTTCTGT
CTTCCCACGCTACCCTTATCCTGGTGAGAATTTAGCTCCTATGTACCCAACTTTCCCCACCACATATGAGCCAAATTTAACCGGGAAATGCCCTGTAAAT
TTCACTGCTATGTCAAATGTCATAGACAGAACCGCATCTGATTGCTCTCAACCCTTGGCAGCTCTTGTAGGAAATGTAATATGCTGTCCACAGCTTGGTA
GTTTGCTCCACATTTTCCAGGGCTATTTCAGTGGCAACTCTGATAAGTTGGTTTTGCAGAATGCAGTGGCTGATGATTGTTTTTCAGATATCATTAGTAT
ACTAGCAAGCAGAGGGGCCAATATCACTATACCTACACTTTGCTCTGTTAAATCGTTAAATCTTACTGGTGGGTTGTGTCCTGTGAAGGATGTTGCTAAC
TTTGAGAAAATAGTAAATACAAGCAAATTACTGGAAGCCTGCAGTACTGTCGATCCTCTTAAAGAGTGTTGTAGACCAATTTGCCAATCTGCAATCATAG
AAGCTGCTCTTGAGATTTCTGGGACACAATTGACAATCAATGATAATAGAGATTTGGTGACCGTGCCTCATCATAATGATCCTCTTAGTGATTGCAAAGG
GGTGGTATTTTCATATATCTCTAGGAAGCTATCAGCAGATGCTGCAAATAGTGCATTCCGGATATTATCTGCCTGCAAAGTTAACAAGGCTTGTCCTTTG
AATTTCACACAGCCATTAGAAGTTATTAAAGCATGTCGAAATTTAGCTGCTCCCAATCCCTCCTGCTGTAGCTCATTAAATACATACATTGCTGGGATAC
AAAATCAAATGTTAATTACAAACAAACAGGCGATAATCTGTGCAACAGTTTTGGGGTCCAAGCTACGACAAGGCGGGGTCATGACAAATGTTTATGAGCT
TTGTGACATTGACTTGAAAGATTTTAGCATACAAGCATATGGACAACAAGGGTGTCTACTTCGAAGCTTGCCTGCCGATGTTATATTAGACAATTCGACA
GGGTTCAGCTTTACATGTGACTTGACCGACAACATTGCAGCTCCATGGCCATCATCATCCTCCGTGTCATCCGTGTCTCTTTGTGCCCCAGAGATGTCCT
TGCCTGCCTTGCCTACATCACAGATCAGAAACCCTGGCAATCGTGGTGGTGAGTTGGAGCTGCTGGTACCCATTTTTTCATTTTTTATTTTCAGTGCATT
GTTGTACTGA
AA sequence
>Potri.017G018000.2 pacid=42814429 polypeptide=Potri.017G018000.2.p locus=Potri.017G018000 ID=Potri.017G018000.2.v4.1 annot-version=v4.1
MEGFQTISCLKGSLGHQFLLFIVWLSSFQVAVALQTLLEPNHVSSTSELGTPPISGLFGPIEISPSVFPRYPYPGENLAPMYPTFPTTYEPNLTGKCPVN
FTAMSNVIDRTASDCSQPLAALVGNVICCPQLGSLLHIFQGYFSGNSDKLVLQNAVADDCFSDIISILASRGANITIPTLCSVKSLNLTGGLCPVKDVAN
FEKIVNTSKLLEACSTVDPLKECCRPICQSAIIEAALEISGTQLTINDNRDLVTVPHHNDPLSDCKGVVFSYISRKLSADAANSAFRILSACKVNKACPL
NFTQPLEVIKACRNLAAPNPSCCSSLNTYIAGIQNQMLITNKQAIICATVLGSKLRQGGVMTNVYELCDIDLKDFSIQAYGQQGCLLRSLPADVILDNST
GFSFTCDLTDNIAAPWPSSSSVSSVSLCAPEMSLPALPTSQIRNPGNRGGELELLVPIFSFFIFSALLY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G30700 unknown protein Potri.017G018000
[exp]
0 1
AT3G49750 AtRLP44 receptor like protein 44 (.1) Potri.014G012300
[exp]
5.19 0.7601
AT3G26935 DHHC-type zinc finger family p... Potri.017G063800
[exp]
6.70 0.7459
AT5G59350 unknown protein Potri.010G206100
[exp]
11.22 0.7750
AT5G08335 ATICMTB, ATSTE1... ARABIDOPSIS THALIANA ISOPRENYL... Potri.007G074500
[exp]
12.40 0.7213
AT5G17600 RING/U-box superfamily protein... Potri.003G093100
[exp]
22.53 0.7478
AT3G22190 IQD5 IQ-domain 5 (.1.2) Potri.001G215200
[exp]
30.46 0.6955
AT5G19530 ACL5 ACAULIS 5, S-adenosyl-L-methio... Potri.010G089200
[exp]
31.52 0.7314
AT3G61600 ATPOB1 POZ/BTB containin G-protein 1 ... Potri.001G096100
[exp]
34.64 0.6303
AT3G06330 RING/U-box superfamily protein... Potri.008G196400
[exp]
47.71 0.6478
AT3G11760 unknown protein Potri.016G067600
[exp]
49.14 0.6626

Potri.017G018000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.