Plant FIBer expression Database

Potri.017G018300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G40520 374 / 1e-120 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027029
[exp]
379 / 2e-123 AT5G40520 286 / 1e-87 unknown protein
Lus10025568
[exp]
376 / 2e-122 AT5G40520 285 / 3e-87 unknown protein
PFAM info
Representative CDS sequence
>Potri.017G018300.1 pacid=42814570 polypeptide=Potri.017G018300.1.p locus=Potri.017G018300 ID=Potri.017G018300.1.v4.1 annot-version=v4.1
ATGGAAGCCAAATTAGGGCTTTGCCGAACAGATGGGGAAGCTATAATTACACATGAAAAACACAAAGAGAAGATTCTTAAGCTCAAAAGAAGGTGGTTAT
TAGGACTGCCTTTTTCAAAATCTGAAGACAAAAATTTTCATAAATATGTTGTTTCTAGGTTCGTGCCTGAATCTTTGCAAAGGGATGATGATATATTCTA
TGAGAAAGTAAAAGAGTATGTTGAAGAAGCTTTTGGCGCATGTAATGCTAAAAGAGAGGCTCATATTGCTCCAGACTCTAAACTTTTATTTGACAGAACC
AAGATGAGAAGAATGCTATTATCACGCTTGGATGCTCTGAATAATAAAGGGCTTCACCTTATTGCTATGTTACTTACAGGAGGTGCAGTCAATTTTGAAA
CCACTCGTAAAAAAATGAAAGAGGTGATTAAACAATCAAGATTTCTTAGGGATCCAAATTGCGATCATGACCAAACAGAAATTTTGATGCTGCTGTATCA
ACTAATCAATAGCCCTCAAAATTTTAGAGAGAATTGTTTGGCATTGGTGAATTCCACATTTCAATCTCATCATTCTGCAGCTATTCAAGTACTGGATGGA
CTAGAGGACTTGCCAACTGAAGCCCTGCTTGCTATGCGCAGAAAACTTAGTGGTGTCCCAGCAAGCATTCCCCGTTTACTGAAGAAGAAATACAATCGCT
GTCGAGATAGTGTGATTCATTACATAAGGAAGACTAGCCAGAAAATGCTTTCAGAAATTGGTGGAGGGGATGAGCTGCAGGAACCACTAGCCAAAGCACT
TGGGATTGCAGGTTTATCTGTAAAGCTAACATCAGGCTCTCTAAATTCCTCTTCGAACGACTTCTGTCAATTCTCTCCAGAAATAAAAGTCTTACAGAAT
GAGATATTGAAGGCTCTCTGGTTACTAGGAATGAAGAAGCTTAAATTACCGGAGGTGCAAACCTTGCAGCTTCTGCTGGACCCAAAGGCTGATGTACCAA
AAGGAAGTCTGCGAACAGCGATGAATAAATTGTTAACAGAATATCTTTTCGAGTGCAGTGAGTTTAGTACCGTTCCTAAACCTTTAACAGAAGCTCTTGC
TATTATCAACAGGAGTTCTTGCAAAACCCGGAGTGGATGCTACCCGAAGGAGCAAATTGAAGAAGAGGTGGAATGCATTTTAGGTTTAAGTTCTGAGATA
AAGCAGGTGGTTTGGGATGTTTTTCCTCATCATGAATTTGACGAGGATTTTGCTGATGCTTATGTGGAAGAGTCGGAAGAAAGTGATGGTGGAGATGATG
ATTTTGTCTCTGATCATCACAATATTGGTGAATGTAAATCATATTCAATTGATTGGAATTACCAAGAAGAGAGTTGTGGGGAGCATATACCAATGGACTC
CTCTCCACCTATCTCAAACCCTGACACAAGTCGTGGTCCTACTCTGTTCCATGAAACAAGAAATCATAATGTAGATGTCAGTAAGTTGAGCATAGCAACA
TTTGGGACATCTAGTGTAAATGAAGATGACTTGTCCGTGCACCATTCTCCAAATGGAAATTCAAAAGTCCATTCTTCAATTAGAAATGAACCTGAAAAGG
GTGCTGCAATTGATCCAGGAAACTCTCAGGATGTATCACCACCTTCTACCTTCTGCTTGAAAGGGAAAAACATAAGTGGTAACCTATACCTTGGCATCCA
AGAGATCTGTGACGAGACGAGTATGGTTGCTTACAATCTCATTGGTTACTTAATGGAGGGGCTGGCACGGAAAGAGGGCTTGGATTTAGATTGGGGAGAT
ATTTCTTATCTCAGAGGTGATAAGTCAAGCAAAGAAAATCAAGAAGAAAGAAAGAAATCTTCTGAGAATAATGAGGCTGGTTCAGATATTGCTCAAGTTG
TTGAAGAGTTACTACCTTCCCTCCCGAAGAGTGAGAGCACAAGGTTAAAGGAGTTGATGGCCACATAG
AA sequence
>Potri.017G018300.1 pacid=42814570 polypeptide=Potri.017G018300.1.p locus=Potri.017G018300 ID=Potri.017G018300.1.v4.1 annot-version=v4.1
MEAKLGLCRTDGEAIITHEKHKEKILKLKRRWLLGLPFSKSEDKNFHKYVVSRFVPESLQRDDDIFYEKVKEYVEEAFGACNAKREAHIAPDSKLLFDRT
KMRRMLLSRLDALNNKGLHLIAMLLTGGAVNFETTRKKMKEVIKQSRFLRDPNCDHDQTEILMLLYQLINSPQNFRENCLALVNSTFQSHHSAAIQVLDG
LEDLPTEALLAMRRKLSGVPASIPRLLKKKYNRCRDSVIHYIRKTSQKMLSEIGGGDELQEPLAKALGIAGLSVKLTSGSLNSSSNDFCQFSPEIKVLQN
EILKALWLLGMKKLKLPEVQTLQLLLDPKADVPKGSLRTAMNKLLTEYLFECSEFSTVPKPLTEALAIINRSSCKTRSGCYPKEQIEEEVECILGLSSEI
KQVVWDVFPHHEFDEDFADAYVEESEESDGGDDDFVSDHHNIGECKSYSIDWNYQEESCGEHIPMDSSPPISNPDTSRGPTLFHETRNHNVDVSKLSIAT
FGTSSVNEDDLSVHHSPNGNSKVHSSIRNEPEKGAAIDPGNSQDVSPPSTFCLKGKNISGNLYLGIQEICDETSMVAYNLIGYLMEGLARKEGLDLDWGD
ISYLRGDKSSKENQEERKKSSENNEAGSDIAQVVEELLPSLPKSESTRLKELMAT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G40520 unknown protein Potri.017G018300
[exp]
0 1
AT4G19650 Mitochondrial transcription te... Potri.012G118200
[exp]
2.00 0.8826
AT4G30150 unknown protein Potri.004G167600
[exp]
7.61 0.8340
AT1G15420 unknown protein Potri.001G173300
[exp]
8.12 0.8245
AT4G25630 ATFIB2, FIB2 fibrillarin 2 (.1) Potri.012G144800
[exp]
8.36 0.8164
AT5G59980 Polymerase/histidinol phosphat... Potri.009G025800
[exp]
12.44 0.8310
AT1G15440 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN ... Potri.001G173500
[exp]
13.11 0.8312
AT5G60990 DEA(D/H)-box RNA helicase fami... Potri.007G068800
[exp]
13.49 0.7923
AT4G33890 unknown protein Potri.001G296300
[exp]
14.31 0.7648
AT4G23540 ARM repeat superfamily protein... Potri.006G050000
[exp]
14.83 0.8117
AT2G40360 Transducin/WD40 repeat-like su... Potri.003G009600
[exp]
16.70 0.8321

Potri.017G018300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.