Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43500 811 / 0 NLP8 Plant regulator RWP-RK family protein (.1.2) AT3G59580 654 / 0 NLP9 Plant regulator RWP-RK family protein (.1.2) AT1G64530 392 / 7e-122 NLP6 Plant regulator RWP-RK family protein (.1) AT1G76350 378 / 4e-117 NLP5 Plant regulator RWP-RK family protein (.1) AT1G20640 372 / 2e-114 NLP4 Plant regulator RWP-RK family protein (.1.2) AT4G24020 374 / 4e-114 NLP7 NIN like protein 7 (.1) AT4G35270 353 / 3e-106 NLP2 Plant regulator RWP-RK family protein (.1) AT2G17150 339 / 2e-101 NLP1 Plant regulator RWP-RK family protein (.1.2) AT4G38340 281 / 2e-81 NLP3 Plant regulator RWP-RK family protein (.1) AT5G66990 56 / 3e-08 RKD3 RWP-RK domain-containing 3, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G133400 [exp] 1565 / 0 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.003G143000 [exp] 419 / 2e-130 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.002G009700 [exp] 414 / 1e-129 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.005G251700 [exp] 397 / 3e-123 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.001G087900 [exp] 392 / 2e-120 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.004G205500 [exp] 354 / 1e-106 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166666 [exp] 340 / 2e-101 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.016G042900 [exp] 333 / 2e-99 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166400 [exp] 333 / 4e-99 AT4G35270 730 / 0.0 Plant regulator RWP-RK family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008143 [exp] 841 / 0 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10019368 [exp] 835 / 0 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10003199 [exp] 381 / 2e-116 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10012257 [exp] 378 / 4e-116 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10016018 [exp] 377 / 5e-116 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10023049 [exp] 352 / 2e-107 AT4G24020 783 / 0.0 NIN like protein 7 (.1) Lus10014428 [exp] 352 / 3e-107 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10023930 [exp] 348 / 9e-106 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10013224 [exp] 334 / 1e-101 AT1G20640 600 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10030744 [exp] 254 / 9e-73 AT1G20640 427 / 1e-138 Plant regulator RWP-RK family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain CL0072 [poplar] [flax] PF02042 [poplar] [flax] RWP-RK RWP-RK domain
Representative CDS sequence Show only first row Show all	>Potri.017G018500.2 pacid=42813314 polypeptide=Potri.017G018500.2.p locus=Potri.017G018500 ID=Potri.017G018500.2.v4.1 annot-version=v4.1 ATGGAGAACCCCTTCTCGTCAAAAGAAAAGGGGACGGGTTATTGGGCTTCTCCAAGAGCTCAGATGGATGTTGTCACACCTTTAGATGGTTCCCCGAGGA ATTTACTTCTTGAGGATCCATTCAACAATTTTTCGGAGCTTATGAATTTTGATATTTATGCTGAATTGTGCAACAACCCATCAGCAATGGATCAAATGCT TGACCCATTTGGAATGCCATCCTTTCCATCAACATCCTCTCCATCCTTTGATCCAGGAAGTTTTGCAGCACTAAATTCTGCTCCTGTACAGAATACAACA AATGCTGCTGGGACTTCTTACAATGATGGGGATAAAGTGGTGCTTCAGCAAATAAATTCCCATTTTTGTTATCCCTCAGATTCAATTGATACTGATGATT TGGGTGCAAAGCACAGTAACGATGCTGGTCAACAAAATCGTTTCTCAAACTTGACAGATCATATTATTGCTCGGCCACTTGCACCATCACTTGATGAGAG GATGCTAAGGGCATTATCCTTGTTGAAGGTTTCATCTGGAGGGGGTTTTTTGGCACAAGTGTGGGTTCCCAGAAGGATTGGGAATCAATACATGTTAAGC ACTACAGATCAACCATACTTGCTTGACGAAATGCTAGCAGGGTTCCGAGAGGTGTCTAGAACATTTACCTTCCCTGCAGAAGTGAAGCCTGGTTTGCCTC TAGGGCTTCCTGGTCGTGTATTCATTTCCAAAGTTCCAGAGTGGACCTCAAATGTAATTTATTATAGCAAGGGTGAATACTTACGAGCAAAGCAGGCAGC TGATCATGAAGTACGGGGTTCTTTTGCATTACCGATCTTTGATCCTGATGAGATGTCCTGCTGTGCTGTTCTGGAACTTGTCACTATGAAGGAGAAACCG GATTTTGATTCAGAGATGGAAAATGTTTGCCATGCACTTGAGGCTGTGAACTTACGGAGCACTGCACCTCCTCGACTTCTTCCTCAGTGTCTCTCAAGCA ACAAAAGAGCTGCCTTGTCTGAAATAGCTGATGTTCTACGAGCTGTATGTCATGCACATAGATTGCCACTGGCTCTCACGTGGATTCCTTGCAATTATAC CGAGGAAGCTCTTGATGAAATCGTAAAAGTGCGTGTCAGGGAAGCCAATTCAAGGTCAAGTGGTAAATGTGTATTGTGCATTGAAGATACAGCTTGCTAT GTGAATGACAGAAAAATGCAAGGTTTTGTGCATGCATGTGCAGAACATTATATTGAGGAAGGGCAAGGTCTAGCTGGAAAAGCACTACAATCAAATCATC CATTCTTCTTCTCTGATGTGAAGGCATATGATATAACTGAGTATCCACTTGTTCATCATGCACGCAAGTATGGTCTGAATGCTGCAGTTGCAATCAGGCT AAGAAGCACCTACACTGGTGATGAGGACTATATTTTAGAGTTCTTTCTCCCTGTCAATATAGAGGGAAGTTCAGACCAACAACTCCTGCTGAACAATCTC TCAGGTACCATGCAGAGAATTTGTAAGAGTTTGAGAACAGTTTCAGAGACAGAATTTGTTAGGCAGGAATGTTCTGAAGATGGTTTGCCAAAAGAAGCAG TTCCAAGCGTCAGACCAATGTCCATTTCAAAGGGCAGCTCTCAAACTGCAATATCAGAAGGAAACTTGAATTCAGCTGCCAAGATGCTTTTTAATATGTC TGGTTCAAAAAATGATCAAACAGAATCAAATAGCTCTAACGAACAGAAAATGAGTGGATCTAGAAGACAGGTGGAGAAAAAGAGAAGCACAGCAGAGAAA ACTGTGAGCCTGAGCGTTCTTCAGCAATACTTTTCTGGAAGTCTCAAGGATGCTGCCAAAAGCATTGGTGTTTGCCCCACAACACTGAAAAGAATTTGCA GACAACATGGAATATCCAGATGGCCATCCCGCAAGATAAACAAGGTGAACCGCTCATTAAAAAAAATACAGACTGTGCTTGACACTGTTCAGGGGGTAGA AGGAGGGCTGAAATTTGATCCCACCGCAGGTGGTTTCATTGCTGGGGGAGCCATGATGCAAGAATTTGATCTTCGAAATGGTTTTGTATTTCAAGAGAAA AATCTGTCCAATAGAAATTCTGATCCAGCTAACCATGATGTAGTTTCTGTACGTCCAGCTCCTTGTACTGATGGCAATAATTCTACTGTTAAAGTAGAAA ATGATGAATGTCATATAGGTAGCAGGGGAGTATTAAAGGAGTCTTGCGTTCATGTGATTGATTGTAGTGAAGATGCCAAGTCAGCTGCAGTGGATGCTGG ATTATGTGAGCAGGCTAACTTTGGCTCTGGACCTTGGGCTTGTCTTGAAAATGACATCACGGTTTCTCTTGCAAAAGCAGGCAACAAATGGGGCATGAAA AATGGTGGTATTATACTAGAGAATTTGGACTCTCACTTTGTGTCTCAAAGCTCAAGCTCCTTCGCCAAGGAGATGGATACCAAAATGGAGGGTGACGATG GAAATGTAGAACATAACCAGCCTACTTCTTCAAGCATGACTGACTCATCAAATGGCACTGGTTCAATGATGCATGGCAGTATATCAAGCTCTTCGAGCTT TGAGGAGAGGAAGCATTCAAAAGTGCAAACTAGTTTTTGTGATGGTGATTTAAAAATTACTGTAAAAGCCAGTTACAAAGAAGATATAATCCGCTTCAAG TTTGATCCATCAGCGGGATGTTTGCAGCTCTACAAAGAAGTATCAAATAGGTTCAAATTGCAAACTGGAACATTCCAACTCAAGTATCTAGATGACGAAG AGGAGTGGGTACTGTTGGTGAGTGACTCTGACTTGCAGGAGTGTCTGGAGATAATGGAATATGTTGGGACTCGTAATGTGAAGTTCCTTGTTCGTGACGC TGTTGCGCCTTTTGTAATGGGAAGCTCTGGCAGCAGCAATAGCTTTTTGGTAGGAAGCTCCTAG
AA sequence Show only first row Show all	>Potri.017G018500.2 pacid=42813314 polypeptide=Potri.017G018500.2.p locus=Potri.017G018500 ID=Potri.017G018500.2.v4.1 annot-version=v4.1 MENPFSSKEKGTGYWASPRAQMDVVTPLDGSPRNLLLEDPFNNFSELMNFDIYAELCNNPSAMDQMLDPFGMPSFPSTSSPSFDPGSFAALNSAPVQNTT NAAGTSYNDGDKVVLQQINSHFCYPSDSIDTDDLGAKHSNDAGQQNRFSNLTDHIIARPLAPSLDERMLRALSLLKVSSGGGFLAQVWVPRRIGNQYMLS TTDQPYLLDEMLAGFREVSRTFTFPAEVKPGLPLGLPGRVFISKVPEWTSNVIYYSKGEYLRAKQAADHEVRGSFALPIFDPDEMSCCAVLELVTMKEKP DFDSEMENVCHALEAVNLRSTAPPRLLPQCLSSNKRAALSEIADVLRAVCHAHRLPLALTWIPCNYTEEALDEIVKVRVREANSRSSGKCVLCIEDTACY VNDRKMQGFVHACAEHYIEEGQGLAGKALQSNHPFFFSDVKAYDITEYPLVHHARKYGLNAAVAIRLRSTYTGDEDYILEFFLPVNIEGSSDQQLLLNNL SGTMQRICKSLRTVSETEFVRQECSEDGLPKEAVPSVRPMSISKGSSQTAISEGNLNSAAKMLFNMSGSKNDQTESNSSNEQKMSGSRRQVEKKRSTAEK TVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDTVQGVEGGLKFDPTAGGFIAGGAMMQEFDLRNGFVFQEK NLSNRNSDPANHDVVSVRPAPCTDGNNSTVKVENDECHIGSRGVLKESCVHVIDCSEDAKSAAVDAGLCEQANFGSGPWACLENDITVSLAKAGNKWGMK NGGIILENLDSHFVSQSSSSFAKEMDTKMEGDDGNVEHNQPTSSSMTDSSNGTGSMMHGSISSSSSFEERKHSKVQTSFCDGDLKITVKASYKEDIIRFK FDPSAGCLQLYKEVSNRFKLQTGTFQLKYLDDEEEWVLLVSDSDLQECLEIMEYVGTRNVKFLVRDAVAPFVMGSSGSSNSFLVGSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43500		NLP8	Plant regulator RWP-RK family ...		Potri.017G018500 [exp]	0	1
AT4G25880		APUM6	pumilio 6 (.1.2.3)		Potri.003G009900 [exp]	3.74	0.8852
AT3G54850		ATPUB14	plant U-box 14 (.1)		Potri.008G035700 [exp]	4.58	0.8716
AT1G45160			Protein kinase superfamily pro...		Potri.002G263000 [exp]	8.71	0.8656
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.008G041900 [exp]	9.59	0.8721
AT2G47210	MYB		myb-like transcription factor ...		Potri.014G117400 [exp]	12.96	0.8569
AT5G45190			Cyclin family protein (.1.2)		Potri.007G067100 [exp]	15.65	0.8519
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.008G078500 [exp]	16.58	0.8612
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166932 [exp]	19.49	0.8484
AT5G46190			RNA-binding KH domain-containi...		Potri.011G082500 [exp]	22.71	0.8480
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Potri.005G190700 [exp]	23.74	0.7810

Compare expression of checked genes

Potri.017G018500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.