Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58190 481 / 1e-152 AtRLP9 receptor like protein 9 (.1.2) AT1G74170 461 / 2e-145 AtRLP13 receptor like protein 13 (.1) AT1G07390 455 / 8e-143 AtRLP1 receptor like protein 1 (.1.2.3) AT1G74190 448 / 4e-141 AtRLP15 receptor like protein 15 (.1) AT2G25470 443 / 3e-139 AtRLP21 receptor like protein 21 (.1) AT3G53240 435 / 8e-137 AtRLP45 receptor like protein 45 (.1) AT1G74180 434 / 2e-135 AtRLP14 receptor like protein 14 (.1) AT5G49290 424 / 2e-132 ATRLP56 receptor like protein 56 (.1) AT1G54470 320 / 2e-93 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT2G34930 263 / 8e-74 disease resistance family protein / LRR family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G007600 [exp] 1628 / 0 AT1G58190 439 / 2e-136 receptor like protein 9 (.1.2) Potri.005G007900 [exp] 1435 / 0 AT1G74170 430 / 5e-132 receptor like protein 13 (.1) Potri.005G009700 [exp] 1430 / 0 AT1G74190 453 / 4e-141 receptor like protein 15 (.1) Potri.005G011600 [exp] 1392 / 0 AT1G74190 439 / 1e-135 receptor like protein 15 (.1) Potri.005G013100 [exp] 1331 / 0 AT1G74190 452 / 6e-143 receptor like protein 15 (.1) Potri.005G013400 [exp] 1240 / 0 AT1G74190 412 / 4e-129 receptor like protein 15 (.1) Potri.005G013200 [exp] 1068 / 0 AT1G58190 453 / 1e-142 receptor like protein 9 (.1.2) Potri.005G006701 [exp] 999 / 0 AT1G74190 438 / 3e-136 receptor like protein 15 (.1) Potri.003G028557 [exp] 963 / 0 AT1G07390 388 / 1e-117 receptor like protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030068 [exp] 454 / 4e-144 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10042381 [exp] 397 / 2e-121 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10016340 [exp] 298 / 2e-85 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10039531 [exp] 279 / 1e-78 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 276 / 6e-78 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 276 / 7e-78 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10016384 [exp] 275 / 5e-77 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 272 / 3e-76 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10039514 [exp] 272 / 3e-76 AT2G34930 447 / 6e-142 disease resistance family protein / LRR family protein (.1) Lus10002742 [exp] 271 / 4e-76 AT1G58190 399 / 6e-124 receptor like protein 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.017G018700.1 pacid=42813621 polypeptide=Potri.017G018700.1.p locus=Potri.017G018700 ID=Potri.017G018700.1.v4.1 annot-version=v4.1 ATGGTGGTGAAAAAGATATTGTGGGTTTGGATTTTGGTCACATTATTGACTTTGGTTGGCGAGTGGTATGGTCGTTGCTATGGGTGTTTGGAGGATGAGA GAATTGGTCTCTTGGAGATCAAAGCTTTGATCGACCCAAATCACCTTTCCTTGGGAGATTGGGTGGACAGTAGTAATTGTTGTGAGTGGTCTAGGATCGA GTGTGATAACACTACAAGGCGAGTGATCCGACTCTCTCTTTGGGCTGCAAGTGATTGGCGCTTGGGCGATTGGGTTCTCAACGCATCTTTGTTTCTGCCT TTTAAGGAATTGCATAGTCTTGATTTGAGTGCTAATGGATTAGTTGGTTGCTCTGAGAATGAGGGCTTCGAAGTCCTATCATCAAAACTGAGGAAACTGG AAGTACTTGACCTAAGTCTGAACCGATTTAATAATGATAAAGGATTTTTATCATGCTTCAATGGGCTTTCCGCTCTCAAGTCTTTGGACCTATCAGACAT TGAGGTACTGACAGGATCAGGTCTCAAAGTCTTGTCATCAAGGTTGAAAAATCTGGAGAACCTTGACCTGCGTGACAATCAATACAACGACAGCATTTTT TCATTTTTAAGTGGATTTTCATATCTCAAGCATTTAGATCTGTCATTCAATCACCTGACAGGATCTACTGGTATCAATAGAACTTTCTTCAATTCGAGCA CCCTTGAAGAATTGTATCTAGATGGTAGTTCTCTCCCATTAAACTTTCTCCAGAACATCGGAGCATTGCCTGCTCTTAAAGTATTATCTGTTGGCCAATG TGACCTCAATGGCACCTTGCCCGTTCAAGGGTTGTGTAATTCATCTAGCCTTGAAGAAGTGTTCCTCGATGGTTCTTCTAATATCCCAGCAAGCTTTCTT AGGAACATTGGACCCTTGTCTACTCTTAAAGTCCTATCCTTGAGTGGAGTTGACTTCAATAGCACCCTACCTGCTGAAGGCTGGTGTGAACTGAAGAATC TTGAACAGCTATATCTCTCACGAAACAATCTAAAGGGCGTACTCCCTCCTTGTTTGGGAAATCTATCATTTCTACAAATCTTGGATTTATCTCGCAATCA ATTGGAGGGAAATATTGCCCTTAGTCACCTTTCCCATCTTACGCAGCTTGAAGAGCTCAAAGTTTCAAATAACTACTTTCAAGTTCCAATATCATTTGGT TCATTTATGAACCTCTCCAACCTCAAGGTCATTGCATGCGATAACAATGAGCTAATAGCTGCACCCAGTTTTCAGCCTTCAGCTCCCAAGTTCCAGCTTC TTTACTTTAGTGCTTCAAACTGTACTTCAAAACCACTCAAAGCTGGATTTCCAAACTTCCTGCGTAGCCAACATGATTTGGTGTTTGTTGATCTATCCCA CAACAAATTCGTTGGAGAACCTTTCCCATCTTGGCTGTTTGAGAATAATAGATTGTTAAATCAACTACATTTGAGAGACACCTCATTTATAGGTGGTCCT TTGCAGCTGCCACAACATCCAACACCCAACCTTCAGACAGTAGATATGTCTGGCAACAACATACATGGTCAAGTTGCAAGAAACATATGTTTGATTTTTC CACGTTTGAAGAACTTCGTGATGGCTAACAACAGCCTCACAGGTTGTATTCCTCCTTGTTTTGGGAATATGAGCTCTCTCGGATACTTGGATCTTTCCAA CAATCACATGTCTTGTGAACTGCTTGGGCATAATTTGCCAACAGTAGGCTCCTCGTTGTGGTTTTTGAAGCTGTCCAATAACAATTTCAAAGGGCGATTA CCACTCTCTGTGTTCAACATGACTAACCTATCGTACCTCTTTCTCGATGGAAACAAATTTGCAGGACAAGTATCTGGTACCTTTTCTCTTGCATCATCAT TTTCGTGGTTTGATATCAGTAACAATCTTTTGTCAGGCATGCTTCCAAGGAGAATTGGGAACTCTTCACGAAACAGCTTTGCTCAGGCAATTGATTTGTC CAGAAATCATTTTAAAGGTACCATTCCAATAGAATATTTCAACTCCGATTCTCTTGAATATTTAGATCTTTCTGAAAACAATCTGTCTGGGTCTTTGCCG TTGGGCTTCCATGCATCAGATTTACGCTATGTCCACCTTTACAGAAATCAATTGAGCGGTCCACTGCCATATGCTTTTTGTAATCTCTCTTCGTTGGTTA TATTTGATCTCGGCGATAACAACTTAACTGGGCCCATTCCAAATTGGATTGATAGCCTTTCGGAATTGAGCATTTTTGTTCTCAAATCTAATCAATTCAA TGGGAAACTTCCTCAACAGTTATGCTTGTTAAGGAAATTAAGCATATTGGATCTTTCAGAAAATAAATTTTCTGGTCTGTTACCCTCATGTTTGAGCAAT TTAAATTTTACGGCATCAGATGAAAAAACTTCGGTTAAACCTGTTATGATGTCACGAGATGCTGAAAAACGGGAAGAAATATTTGCATCCATAGGTTTTT ATCTTCAAGAACAAACTGTGTGGCCAGAGATTGATGTAAAAATAGTTGTGGAGCTTACAGCAAAGAAAAATTTCTACACTTACGAGGGCGATATCCTTCG TTACATGTCTGCTGTGGATCTGTCTTGTAACAGATTCACTGGAGAAATCCCGACAGAATGGGGAAACTTAAGTGGCATATTCGCTCTAAATCTGTCACAA AATAATCTCACGGGATTGATCCCTTCATCTTTCTCCAATCTGAAGTACATAGAGAGCTTGGATCTTTCTCACAACAACTTGAATGGGAGAATTCCTGCAC AACTCGTTGAACTGAACTTTCTAGCAGTTTTCAACGTGTCGTACAATAATTTGTCAGGAAGAACACCGGAGATGAAATATCAATTTGCTACCTTTGATGA GAGCAGTTATAAAGGGAATCCTCTTCTTTGTGGACCTCCATTGCAAAACAGTTGCGATAAAACAAAATCACCATCAGCGAGATTGCCTAACGATTCCAAC GGAGATGATGGATTAATAGACATGGACAGTTTCTATGCCAGCTTTGGTGTGTTTTACATAATTGTGGTGTTGACAATTGCAGCATTACTGTGCATAAATC CGCATTGGCGACGCAGGTGGTTTTACTTCATTGAAGAATGCATTGACACTTGCTACTGCTTTTTGGCTATAAACTTTCGCAAGTTGTCCAGATGCAGAAG GTGA
AA sequence Show only first row Show all	>Potri.017G018700.1 pacid=42813621 polypeptide=Potri.017G018700.1.p locus=Potri.017G018700 ID=Potri.017G018700.1.v4.1 annot-version=v4.1 MVVKKILWVWILVTLLTLVGEWYGRCYGCLEDERIGLLEIKALIDPNHLSLGDWVDSSNCCEWSRIECDNTTRRVIRLSLWAASDWRLGDWVLNASLFLP FKELHSLDLSANGLVGCSENEGFEVLSSKLRKLEVLDLSLNRFNNDKGFLSCFNGLSALKSLDLSDIEVLTGSGLKVLSSRLKNLENLDLRDNQYNDSIF SFLSGFSYLKHLDLSFNHLTGSTGINRTFFNSSTLEELYLDGSSLPLNFLQNIGALPALKVLSVGQCDLNGTLPVQGLCNSSSLEEVFLDGSSNIPASFL RNIGPLSTLKVLSLSGVDFNSTLPAEGWCELKNLEQLYLSRNNLKGVLPPCLGNLSFLQILDLSRNQLEGNIALSHLSHLTQLEELKVSNNYFQVPISFG SFMNLSNLKVIACDNNELIAAPSFQPSAPKFQLLYFSASNCTSKPLKAGFPNFLRSQHDLVFVDLSHNKFVGEPFPSWLFENNRLLNQLHLRDTSFIGGP LQLPQHPTPNLQTVDMSGNNIHGQVARNICLIFPRLKNFVMANNSLTGCIPPCFGNMSSLGYLDLSNNHMSCELLGHNLPTVGSSLWFLKLSNNNFKGRL PLSVFNMTNLSYLFLDGNKFAGQVSGTFSLASSFSWFDISNNLLSGMLPRRIGNSSRNSFAQAIDLSRNHFKGTIPIEYFNSDSLEYLDLSENNLSGSLP LGFHASDLRYVHLYRNQLSGPLPYAFCNLSSLVIFDLGDNNLTGPIPNWIDSLSELSIFVLKSNQFNGKLPQQLCLLRKLSILDLSENKFSGLLPSCLSN LNFTASDEKTSVKPVMMSRDAEKREEIFASIGFYLQEQTVWPEIDVKIVVELTAKKNFYTYEGDILRYMSAVDLSCNRFTGEIPTEWGNLSGIFALNLSQ NNLTGLIPSSFSNLKYIESLDLSHNNLNGRIPAQLVELNFLAVFNVSYNNLSGRTPEMKYQFATFDESSYKGNPLLCGPPLQNSCDKTKSPSARLPNDSN GDDGLIDMDSFYASFGVFYIIVVLTIAALLCINPHWRRRWFYFIEECIDTCYCFLAINFRKLSRCRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.017G018700 [exp]	0	1
					Potri.007G089400 [exp]	3.46	0.9137
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Potri.011G104600 [exp]	3.46	0.9141
AT1G20225			Thioredoxin superfamily protei...		Potri.002G017500 [exp]	5.47	0.8866
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G219800 [exp]	7.07	0.8972
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014636 [exp]	7.34	0.8844
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Potri.018G024200 [exp]	8.94	0.8491
AT3G28890		AtRLP43	receptor like protein 43 (.1.2...		Potri.010G009750 [exp]	10.95	0.8703
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094700 [exp]	11.48	0.8826
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009400 [exp]	11.95	0.8764
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G014700 [exp]	13.63	0.7753

Compare expression of checked genes

Potri.017G018700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.