Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42170 280 / 4e-82 BED zinc finger ;hAT family dimerisation domain (.1) AT1G18560 80 / 4e-15 BED zinc finger ;hAT family dimerisation domain (.1) AT4G00690 59 / 1e-08 ULP1B UB-like protease 1B (.1) AT3G06910 49 / 1e-05 ULP1A, ELS1, AtULP1a ESD4-LIKE SUMO PROTEASE 1, UB-like protease 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G026066 [exp] 417 / 3e-135 AT3G42170 0 / 1 BED zinc finger ;hAT family dimerisation domain (.1) Potri.017G018801 [exp] 333 / 1e-98 AT2G01570 218 / 3e-60 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.011G104000 [exp] 317 / 3e-96 AT3G42170 381 / 7e-123 BED zinc finger ;hAT family dimerisation domain (.1) Potri.001G383800 [exp] 307 / 2e-92 AT3G42170 387 / 4e-125 BED zinc finger ;hAT family dimerisation domain (.1) Potri.018G126750 [exp] 260 / 2e-75 AT3G42170 857 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.018G126500 [exp] 253 / 3e-72 AT3G42170 796 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.004G126740 [exp] 253 / 2e-71 AT3G42170 803 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.004G126780 [exp] 251 / 1e-70 AT3G42170 796 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.016G027201 [exp] 201 / 2e-59 AT3G42170 60 / 9e-11 BED zinc finger ;hAT family dimerisation domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005558 [exp] 294 / 3e-87 AT3G42170 351 / 5e-111 BED zinc finger ;hAT family dimerisation domain (.1) Lus10032337 [exp] 259 / 6e-72 AT3G42170 839 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Lus10021752 [exp] 47 / 6e-06 ND / Lus10010039 [exp] 49 / 8e-06 ND / Lus10023104 [exp] 44 / 0.0005 AT4G15880 407 / 5e-138 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Lus10022109 [exp] 41 / 0.0006 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF02892 [poplar] [flax] zf-BED BED zinc finger CL0125 [poplar] [flax] Peptidase_CA PF02902 [poplar] [flax] Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain CL0125 [poplar] [flax] PF05699 [poplar] [flax] Dimer_Tnp_hAT hAT family C-terminal dimerisation region CL0125 [poplar] [flax] PF14372 [poplar] [flax] DUF4413 Domain of unknown function (DUF4413)
Representative CDS sequence Show only first row Show all	>Potri.017G019466.1 pacid=42814354 polypeptide=Potri.017G019466.1.p locus=Potri.017G019466 ID=Potri.017G019466.1.v4.1 annot-version=v4.1 ATGTTTTCAGAAAAACCATTCATCAGGAAACGAGGCTCGAAAGTTAGTAAAAACAATGATAAAATTGAACCTGCTCCAGATCCTGATGGTAATATGTTCA TCGAATGTGCTGATAATAAACGACGAAAGGTATCTGAAGTGTGGAAACATTTCGATAAGGTTAAAGACAAAGAAAATGGTGCAGTATGGGCCATATGTAA AGGATGTCAAAAGAAGTATCCAGGGGAAAGCACGAAGGGAACTTCAAATCTACACAAACACTTAAAAAGTTGTTCAAAAAAGGGACAGAGAGATGCAAAA CAACATACATTGCCTTCTGATTTGGGAGGGAATTTCGTGTTTGATCAAGAAAGGAGTCACCTTAACTTTGTTAGAATGATTATGAAGCTCGGATTTCCAT TGGATATGGTTCAAAATGAGTTCTTCAAAACTTTTGTCTCCGATCTGCAGCCAAAGTTTCAACTCTGTTCACAAGACAGTGTACAGGCTGATGCTCTTTC TATTTACAGACAAGAGAAAGAGAAACTAATGAAATATCTTGATAATCTCTCATCTCTATTCAGTATAACAATTGATTTGCAGTCATACGGTGATAACAAG ATAACCTGCTGCTTGACCATGCATTTTATTGATGATGGGTGGAGGATGAATAAGAAGATTTTGGCTTTCAGGAGTATAGAACATGATTATATGAATGAAG CTGTGAAAGATGTGCTAGTGGAGTGGAACATCATTAAGAAAGTGCACTTCATGTTTGCAGAAATTGCTCCACCAAACAGTCAAATGACTAGAGAATTCAG AAGTAAGCTTGTCAGTCAATTCCCACATATGAATGGGGACTTGCTATGTTTTTCTAGCTACGCACAAACTCTTGAACTTCTTGCTCGAGATGGGTTTTAT GAGATAAAAGATGTGCTTAACAAGATTAGGGGCTGTGTTGAATATGTGAATGCAACACCAATTAACCAAGATAAGTTTCGGGAAGCAATTAATAATGTGA AATTGCAAGATATGAAAGCAGCCTCTCATGATGATCCTACCAGATGGGATACTACATTTGTCATGCTCATGAGTGCATTGGAATTAAGAGAAGCTTTTAC TCAACTCGAGCAAGTTGATTTTGATTTTAAGGTGAATCCATCTGCAGAGGAGTGGAAGATGGCGATGAGTGTATGTGAGTGTTTAAAAGTGATCCACAAA TCTTTAGGCAGTTCTTCATCAAGCATAGATACATTCTTCTTCCATGTTTGCTCTATATATAAGAACTTGCTTTCATGGGAAAAGAGTGAGCATGCATATG TTTGTTCGATGGCAAAGAGAATGAAGGTGAATCTTGATAGGCATTGGAGTGAATGGAGTTTTGCATTTGGAATCCTATTAGTACTCGACCCGCGCTGTAA ACTTAAATTTGTGCAGTATGGGTTTTTGCTGATGTATGGCAGTGATGCTAGCAAATACTTGCTGGAATTTCGTAGCAAACTTACATGTATGTACAACAGT TATGCGAATGACACTGGTTATATAGCATCACCTGCCAGCGACATCAGTTGTTTGCCATCATATGATCTGGATTCTGATGGTATGTTCTTGGGATTCTGTG AGTGGCTTAAGGTTGATCCGCCAAAATCTGATCTTGATCGGTATTTAGGAGAGCCTGTGGAAAACCGGGATAAGGTTTCAGATGTATTAGCTTGGTGGCG AGTCAATGCTCCAAGATTTCCAACCCTTGGTAAAATGGCTCGTGATTTCTTAGCAATTCCAATATCAGCGATTCTATCAAAGTCTACTATCAGCGGTGAA GCTACAAAGGTGAATCCAGCATTCAATGTTTTGGGGCCAGAGACCATAGAGGGTTTTATATGTGGACAGGACTGGTTGGAAAGCTCTGAAAACAACAGCA AGGAAGGGAAGCCTGGTTCTTCTCTGGTCTCCTCAAATGTGAGATTTGACTCACCTGGGAAGCAAATGTCCAAATATTTGGTTGGTCCGTTTATAGTGAG CAAACCTACCAGTCCAGAGGACTTAAAGTTAATCCAATATGTCTTTGATTCTTCACTGAGTGAGAGTGAGACTATTGTCCAATGCAAGAATTATCATTTA TCTCGGAGGGAACTCTACTCTCTGAGACCAGAGACCTGGCTTGATGATAACGTCCTTTCTACGATATCTGATGCCATGACTTTAGTTAAGAGGAAGATGG AAGATTCTGTAAATTGGTATCTGCCAATTGTTTTTGCGGCGAATGCAGATGATCCATCTAAGTGTATTTCTTTCGCGAAAAAGCACAGGATCAAGGAAAA CTACATGTCAGATCTTTTGTGCTGTGAAAAGGCGTTTGTTCCTGTGTTTGACAACGAAAGAAGGCATTTCTTTCTATTTGTACTACAATTGAAAAAGCAA GTTGTTGAGATATGGGATTCATTAGCTGCATCATGTCAGAGTGATTGGGTTGACAGGCGACTGCATAACTTGTTGGTTAGCCTGGACGCCCTTTTCAAAG ATGATATAGATCAGAACTACCAAAAAGTTTGGTCCTTCACAGATTTCAGAGTGGAAAGACCATCGAATGTCCCACAGCAACAAAATGGACATGACTGTGG TGTGTATGTTATCAAGTTTATGCTAGCACCAGAAGAAGCGACAAATCCTGATTTTGTGTTCTACAGTGAAAACGAGAGGTTGGAAGTGGTACTAAGATTG CTAGTGAGTGATGTCAACTCATGCAGGAATGATTTGGCTTCTAAGGCTGAGACATATTATGAGCAGAGGTTTGGAAATCATTGA
AA sequence Show only first row Show all	>Potri.017G019466.1 pacid=42814354 polypeptide=Potri.017G019466.1.p locus=Potri.017G019466 ID=Potri.017G019466.1.v4.1 annot-version=v4.1 MFSEKPFIRKRGSKVSKNNDKIEPAPDPDGNMFIECADNKRRKVSEVWKHFDKVKDKENGAVWAICKGCQKKYPGESTKGTSNLHKHLKSCSKKGQRDAK QHTLPSDLGGNFVFDQERSHLNFVRMIMKLGFPLDMVQNEFFKTFVSDLQPKFQLCSQDSVQADALSIYRQEKEKLMKYLDNLSSLFSITIDLQSYGDNK ITCCLTMHFIDDGWRMNKKILAFRSIEHDYMNEAVKDVLVEWNIIKKVHFMFAEIAPPNSQMTREFRSKLVSQFPHMNGDLLCFSSYAQTLELLARDGFY EIKDVLNKIRGCVEYVNATPINQDKFREAINNVKLQDMKAASHDDPTRWDTTFVMLMSALELREAFTQLEQVDFDFKVNPSAEEWKMAMSVCECLKVIHK SLGSSSSSIDTFFFHVCSIYKNLLSWEKSEHAYVCSMAKRMKVNLDRHWSEWSFAFGILLVLDPRCKLKFVQYGFLLMYGSDASKYLLEFRSKLTCMYNS YANDTGYIASPASDISCLPSYDLDSDGMFLGFCEWLKVDPPKSDLDRYLGEPVENRDKVSDVLAWWRVNAPRFPTLGKMARDFLAIPISAILSKSTISGE ATKVNPAFNVLGPETIEGFICGQDWLESSENNSKEGKPGSSLVSSNVRFDSPGKQMSKYLVGPFIVSKPTSPEDLKLIQYVFDSSLSESETIVQCKNYHL SRRELYSLRPETWLDDNVLSTISDAMTLVKRKMEDSVNWYLPIVFAANADDPSKCISFAKKHRIKENYMSDLLCCEKAFVPVFDNERRHFFLFVLQLKKQ VVEIWDSLAASCQSDWVDRRLHNLLVSLDALFKDDIDQNYQKVWSFTDFRVERPSNVPQQQNGHDCGVYVIKFMLAPEEATNPDFVFYSENERLEVVLRL LVSDVNSCRNDLASKAETYYEQRFGNH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G42170			BED zinc finger ;hAT family di...		Potri.017G019466 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Potri.011G008228 [exp]	1.73	0.9739
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121801 [exp]	2.44	0.9565
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Potri.002G235200 [exp]	3.46	0.9343	PDS.2
AT2G25770			Polyketide cyclase/dehydrase a...		Potri.018G046100 [exp]	4.00	0.9394
AT4G27190			NB-ARC domain-containing disea...		Potri.018G136700 [exp]	7.74	0.9323
					Potri.011G014701 [exp]	7.93	0.8964
AT4G35780		STY17	serine/threonine/tyrosine kina...		Potri.007G060600 [exp]	9.05	0.9155
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121900 [exp]	9.32	0.9244
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Potri.013G147200 [exp]	9.48	0.9123
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.001G103100 [exp]	10.67	0.9022

Compare expression of checked genes

Potri.017G019466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.