Plant FIBer expression Database

Potri.017G020864 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G019466
[exp]
99 / 2e-26 AT3G42170 279 / 6e-82 BED zinc finger ;hAT family dimerisation domain (.1)
Potri.017G018801
[exp]
77 / 1e-18 AT2G01570 218 / 3e-60 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G020864.1 pacid=42813289 polypeptide=Potri.017G020864.1.p locus=Potri.017G020864 ID=Potri.017G020864.1.v4.1 annot-version=v4.1
ATGCTAGCATCAGAAGAAGTGACAAGTCCTGATTTTGTGTTCGACAGCGATAACGAGAGGTTGGAAGTGGTACTAAGATTGCTAGCGAGTGATGTCAACT
CATGCAGGAATGATTTGGCTTCCAAGGCTGAGGCATATTATGAGCAGAGGTTTGGAAATCATTGA
AA sequence
>Potri.017G020864.1 pacid=42813289 polypeptide=Potri.017G020864.1.p locus=Potri.017G020864 ID=Potri.017G020864.1.v4.1 annot-version=v4.1
MLASEEVTSPDFVFDSDNERLEVVLRLLASDVNSCRNDLASKAEAYYEQRFGNH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.017G020864
[exp]
0 1
AT5G36930 Disease resistance protein (TI... Potri.006G283600
[exp]
3.16 0.9357
AT1G73360 HD ATHDG11, HDG11,... ENHANCED DROUGHT TOLERANCE 1, ... Potri.004G074800
[exp]
3.46 0.9341
AT4G02550 unknown protein Potri.006G202550
[exp]
7.34 0.9008
AT1G15200 protein-protein interaction re... Potri.001G208200
[exp]
7.48 0.9099
AT2G37030 SAUR-like auxin-responsive pro... Potri.016G091500
[exp]
9.16 0.9180
AT5G40270 HD domain-containing metal-dep... Potri.009G147800
[exp]
12.44 0.9157
AT1G50410 SNF2 domain-containing protein... Potri.014G005701
[exp]
12.96 0.9070
AT4G02550 unknown protein Potri.009G022650
[exp]
15.42 0.9053
AT2G02250 ATPP2-B2 phloem protein 2-B2 (.1) Potri.018G016000
[exp]
17.66 0.9093
AT3G14610 CYP72A7 "cytochrome P450, family 72, s... Potri.005G126600
[exp]
17.88 0.9044

Potri.017G020864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.