Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59580 136 / 1e-36 NLP9 Plant regulator RWP-RK family protein (.1.2) AT2G43500 127 / 1e-33 NLP8 Plant regulator RWP-RK family protein (.1.2) AT1G20640 83 / 3e-18 NLP4 Plant regulator RWP-RK family protein (.1.2) AT1G76350 83 / 4e-18 NLP5 Plant regulator RWP-RK family protein (.1) AT1G64530 79 / 5e-17 NLP6 Plant regulator RWP-RK family protein (.1) AT4G35270 78 / 1e-16 NLP2 Plant regulator RWP-RK family protein (.1) AT4G24020 77 / 3e-16 NLP7 NIN like protein 7 (.1) AT2G17150 76 / 1e-15 NLP1 Plant regulator RWP-RK family protein (.1.2) AT4G38340 48 / 2e-06 NLP3 Plant regulator RWP-RK family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G021330 [exp] 408 / 5e-145 AT3G59580 191 / 3e-54 Plant regulator RWP-RK family protein (.1.2) Potri.017G020398 [exp] 169 / 1e-53 AT3G59580 147 / 4e-41 Plant regulator RWP-RK family protein (.1.2) Potri.007G133400 [exp] 169 / 4e-48 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.017G018500 [exp] 166 / 4e-47 AT2G43500 811 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.005G251700 [exp] 99 / 7e-24 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.002G009700 [exp] 99 / 8e-24 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.003G143000 [exp] 89 / 2e-20 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.001G087900 [exp] 82 / 7e-18 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.009G166666 [exp] 76 / 1e-15 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019368 [exp] 160 / 7e-45 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10008143 [exp] 157 / 4e-44 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10016018 [exp] 95 / 4e-22 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10012257 [exp] 94 / 9e-22 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10030744 [exp] 85 / 7e-19 AT1G20640 427 / 1e-138 Plant regulator RWP-RK family protein (.1.2) Lus10013224 [exp] 80 / 4e-17 AT1G20640 600 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10014428 [exp] 79 / 8e-17 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10003199 [exp] 78 / 2e-16 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10023930 [exp] 76 / 1e-15 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10023049 [exp] 67 / 7e-13 AT4G24020 783 / 0.0 NIN like protein 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G022728.1 pacid=42814204 polypeptide=Potri.017G022728.1.p locus=Potri.017G022728 ID=Potri.017G022728.1.v4.1 annot-version=v4.1 ATGTTACCAGAGCTGTATGCCAAACACACAAAATTGCCACTTGCTCTGACATGGATTCCTTGTGATTATACCTGGGGAACTGTTGATGATATTTCAAAAT TGCGTGTCAGATTACGTGATTCAAGGATGATCCGGAAATGTGTGTTTTTCATAGAGCGTACATCTTGTTATGCCGATGAGGAGATGCAAGACTTTGTGCA TGCTTGTGAGCAACTATTTATGCACAATTGGCAAGGTGCTGCTGGACGAGCCTTTATAACATATCTTCCTTCCTTTGAGCCTGATGTGAAGGAAAATCAT GTAAGCGAGTATCCTCTTGCTCATCACGCACGAAAGTATAATTGGAATGCTGCAGCTGCAATCTGGCTAAGGGGCAGTGATGCTGATTATAACTATATAT TAGAGTTCCTTCTCCTTATCCTCATGAAAGAGAGTTCAGAGCAGCAAGACTTGGTTGGGAACCTGAAGCTTACTCTACGGAAAACTTGTAACAGCTTGAG AATGTTTTCAAAAGAAGAAATATTACTCAGGGAACGAGGTTCTAAAGTTAGTAAAAACAATGCTAAAATTGAACCTGCTCCAAATGCTGATGGTAATATG TTCACCGTATGTGCTAATAATAAAGACGAAAGGTATCTGAAGTGTGAAAATGGTTCGATAAGGTTATAG
AA sequence Show only first row Show all	>Potri.017G022728.1 pacid=42814204 polypeptide=Potri.017G022728.1.p locus=Potri.017G022728 ID=Potri.017G022728.1.v4.1 annot-version=v4.1 MLPELYAKHTKLPLALTWIPCDYTWGTVDDISKLRVRLRDSRMIRKCVFFIERTSCYADEEMQDFVHACEQLFMHNWQGAAGRAFITYLPSFEPDVKENH VSEYPLAHHARKYNWNAAAAIWLRGSDADYNYILEFLLLILMKESSEQQDLVGNLKLTLRKTCNSLRMFSKEEILLRERGSKVSKNNAKIEPAPNADGNM FTVCANNKDERYLKCENGSIRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Potri.017G022728 [exp]	0	1
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Potri.017G020398 [exp]	1.00	0.9380
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Potri.010G100900 [exp]	8.66	0.8945	NHX8.2
AT3G51070			S-adenosyl-L-methionine-depend...		Potri.007G017400 [exp]	9.38	0.8576
AT4G27220			NB-ARC domain-containing disea...		Potri.001G444050 [exp]	12.00	0.9136
AT4G27220			NB-ARC domain-containing disea...		Potri.001G446332 [exp]	12.24	0.9148
AT4G26090		RPS2	RESISTANT TO P. SYRINGAE 2, NB...		Potri.001G435000 [exp]	15.58	0.9152
AT2G33720			AP2/B3-like transcriptional fa...		Potri.004G099600 [exp]	16.73	0.8905
AT3G06080		TBL10	TRICHOME BIREFRINGENCE-LIKE 10...		Potri.005G208301 [exp]	19.89	0.9060
AT4G27190			NB-ARC domain-containing disea...		Potri.001G429430 [exp]	20.49	0.9096
AT2G02250		ATPP2-B2	phloem protein 2-B2 (.1)		Potri.018G016000 [exp]	20.71	0.9131

Compare expression of checked genes

Potri.017G022728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.