Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07565 264 / 3e-89 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) AT1G60670 144 / 2e-42 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) AT1G10820 141 / 2e-41 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) AT1G68160 106 / 2e-27 Protein of unknown function (DUF3755) (.1) AT2G43470 83 / 2e-19 Protein of unknown function (DUF3755) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G132700 [exp] 360 / 3e-127 AT3G07565 265 / 1e-89 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Potri.014G197300 [exp] 252 / 1e-84 AT3G07565 330 / 7e-115 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Potri.008G145100 [exp] 169 / 2e-51 AT1G60670 251 / 4e-83 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Potri.010G097000 [exp] 164 / 2e-49 AT1G60670 243 / 1e-79 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027045 [exp] 206 / 8e-64 AT2G43400 228 / 1e-71 electron-transfer flavoprotein:ubiquinone oxidoreductase (.1) Lus10013072 [exp] 175 / 7e-54 AT1G60670 250 / 6e-83 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10029076 [exp] 172 / 1e-52 AT1G10820 245 / 3e-81 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10030566 [exp] 167 / 2e-50 AT1G60670 239 / 1e-78 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10012911 [exp] 168 / 3e-50 AT1G60670 228 / 2e-73 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10025582 [exp] 135 / 8e-40 AT3G07565 160 / 3e-50 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Lus10025581 [exp] 135 / 5e-38 AT3G07565 155 / 2e-46 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Lus10027044 [exp] 96 / 8e-25 AT3G07565 116 / 2e-33 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Lus10000123 [exp] 58 / 4e-11 AT3G07565 44 / 1e-06 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Lus10019374 [exp] 58 / 4e-11 AT3G07565 44 / 1e-06 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12579 [poplar] [flax] DUF3755 Protein of unknown function (DUF3755)
Representative CDS sequence Show only first row Show all	>Potri.017G023300.1 pacid=42814127 polypeptide=Potri.017G023300.1.p locus=Potri.017G023300 ID=Potri.017G023300.1.v4.1 annot-version=v4.1 ATGGCAAACCCATCCGGGACACATAATCAAGAAGGCAATCAGGGTCCTTCTTCATTCAATGGAAGTAATCCAAATAATGGTAATTTGGGTCAAGACCCTT CTTCTGGTTCATCTTTGAAGCATAATCCTGGTATATCAAATGATTGGACTGGTGAAGAACAGGCAATTCTTGAAGAAGGGTTGGCTAAATATGCAATGGA AACAAACGTAGTACGTTATGCAAAGATAGCTTTGCAGCTACCAAACAAGACAGTCCGAGATGTTGCTTTGCGTTGCAGATGGATGACTAAAAAGGAAAAT AGCAAGCGAAGGAAGGAAGATAATCTAGTACGGAAAAGCAAAGATAAAAAGGAAAGACATAATGATCCTTCTGCAAAGACTTCTAACTTCATGGCTACCC GCCCCAATGTTACTCCATTTGCAACTCCAATGATGCCACTGGACAGTGACGAAGGAATCTCGTATGATGTAATTGGTGGAGTTACAGGAGAGCTTCTTAA TCAAAATGCACAGACCCTCCATCAAATTTCTGCAAACCTTGCAAGTTATCAGATACAAGAGAACCTCAGTCTTCTACGCCAAACTCGTGACAACATCTGC AAAGTTATGAATGAGATGGATGATGTGCCAGAACTCATGAAGCAGATGCCACCACTTCCAGTCAAGTTGAATGATGATCTAGCAGACACCATCCTCCTGC CTCCAAACCTTCCCAGGCAATAA
AA sequence Show only first row Show all	>Potri.017G023300.1 pacid=42814127 polypeptide=Potri.017G023300.1.p locus=Potri.017G023300 ID=Potri.017G023300.1.v4.1 annot-version=v4.1 MANPSGTHNQEGNQGPSSFNGSNPNNGNLGQDPSSGSSLKHNPGISNDWTGEEQAILEEGLAKYAMETNVVRYAKIALQLPNKTVRDVALRCRWMTKKEN SKRRKEDNLVRKSKDKKERHNDPSAKTSNFMATRPNVTPFATPMMPLDSDEGISYDVIGGVTGELLNQNAQTLHQISANLASYQIQENLSLLRQTRDNIC KVMNEMDDVPELMKQMPPLPVKLNDDLADTILLPPNLPRQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07565			Protein of unknown function (D...		Potri.017G023300 [exp]	0	1
AT1G56420			unknown protein		Potri.013G009100 [exp]	1.00	0.8776
AT1G78310			VQ motif-containing protein (....		Potri.002G099900 [exp]	5.29	0.8276
					Potri.001G063309 [exp]	9.48	0.8318
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Potri.011G033300 [exp]	11.74	0.8237
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Potri.001G266000 [exp]	18.65	0.7629
AT3G59670			unknown protein		Potri.007G051100 [exp]	21.74	0.7743
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Potri.001G079900 [exp]	22.36	0.7948
AT1G51450		ASH2R, TRO	ARABIDOPSIS Ash2 RELATIVE, TRA...		Potri.009G051400 [exp]	22.44	0.8137
AT3G22530			unknown protein		Potri.008G154100 [exp]	26.19	0.8210
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Potri.017G072100 [exp]	26.70	0.7916

Compare expression of checked genes

Potri.017G023300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.