Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67550 182 / 3e-51 unknown protein AT2G12400 117 / 8e-28 unknown protein AT2G25270 116 / 1e-27 unknown protein AT1G71110 109 / 3e-25 unknown protein AT1G80540 74 / 7e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G132601 [exp] 788 / 0 AT5G67550 189 / 8e-54 unknown protein Potri.006G060600 [exp] 133 / 2e-33 AT2G12400 579 / 0.0 unknown protein Potri.018G023200 [exp] 125 / 1e-30 AT2G25270 595 / 0.0 unknown protein Potri.018G120200 [exp] 124 / 2e-30 AT2G12400 596 / 0.0 unknown protein Potri.010G115500 [exp] 116 / 2e-27 AT1G71110 646 / 0.0 unknown protein Potri.006G258700 [exp] 84 / 5e-17 AT2G25270 590 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025583 [exp] 338 / 4e-109 AT5G67550 174 / 1e-47 unknown protein Lus10011544 [exp] 174 / 4e-48 AT5G67550 362 / 3e-120 unknown protein Lus10013492 [exp] 127 / 3e-31 AT1G71110 645 / 0.0 unknown protein Lus10001945 [exp] 126 / 7e-31 AT2G25270 650 / 0.0 unknown protein Lus10008813 [exp] 126 / 9e-31 AT2G12400 616 / 0.0 unknown protein Lus10007962 [exp] 112 / 3e-26 AT1G71110 578 / 0.0 unknown protein Lus10008028 [exp] 108 / 1e-24 AT2G12400 641 / 0.0 unknown protein Lus10034641 [exp] 98 / 2e-21 AT1G71110 587 / 0.0 unknown protein Lus10001929 [exp] 85 / 4e-17 AT2G25270 457 / 3e-156 unknown protein Lus10038102 [exp] 75 / 6e-14 AT2G25270 468 / 5e-161 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G023400.2 pacid=42814373 polypeptide=Potri.017G023400.2.p locus=Potri.017G023400 ID=Potri.017G023400.2.v4.1 annot-version=v4.1 ATGGGCTCCACACATGCCACCCTCTTGGTTGTTTCCTTGATTTTCTTGGTCATTTTAGGCTCAAATCTCATTGCAGGACAAACCTTCTCATCAAATTCTT CTGAGCCTGGTACAAATGTGCTTGCTGTAAACAATGTATCACAGACTGTGATGCAGCCAGATGATACTGTGAGGGTGGATCCACTAAAGGATCTCAAGAA ATATAGAGGAGGATATGATATCAAAAACAAACATTATTGGAGTTCAACCATGTTCACAGGAGTTCATGGATATGTCATTGGGGTAATCTGGCTTCTTGGT GGCATAGCATATGGAGGCTTTCTGCTTGCAACTGTCTTTTGTTGTAAAAATAGAAGGAATGAAAAGCTGAAGAAAAGATTACCTTGCCATAAGCAATGTT ACCTCTGGCCTCTTCTCCTGGCTATATTTTTCACCATCTTAGCAATAACTGCATCTGGGCTAGTTCTTGGAGGGAATGCGAAGTTCCATTCGCGAGCAAA AACTGTTGTAGACATCATCATTGACACGGCAAACAATGCAACGAAAACCATGTACAACACAACAGGAGCAATGAAGGACATGAAAGAGAGTCTAGGAGCA TCTAATCAAAGTGCTGCGGTTCAGGCGTCTAGCTTCCTTACCTCCACATCAGAGCAACTTGATGTTGAGGCTGCTGATATACAAAGACAAGCTAGGAAGA ATAGGCGGTTGATCGATAAGGGTCTCAAGATTGTGTATATAGTAACCACAGTGACAATTTCCTTGAACCTGGCTGCGCTAATTGCTCTTTCAGTCTGTGG AACTCTGAGGTTACGGCGACCACTTAACATACTAATTGCAGTGTGTTGGATCCTGACTGTTCTATGCTGGATATTTTTTGGGCTGTATTTCTTCTTACAA AACTTTTCAAGAGATTCATGCACAGCTCTCGAAAGCTTTCAACAGAACCCTTACAATAACAGCTTGAGTTCAATCCTTCCCTGCGATCAATTGCTCTCTG CAAAACCAGTCTTATTTGATGTCAGTCAAGGGATCTACAGCCTTGTCAATCAGGTGAATGCAAACTTATCGACCATACAAGGATTGCCTTATAAAGTGTG CAATCCCTTCTCAGCACCACCTGAATACCAATTCCAGCCCGATAAGTGCCCTTCTAACGCAATCCGAATCGGCGATATCCCACAGGTGTTGAAGGTATTT ACTTGTTCCAGTTTCGACAACGGAACATGTGCCAGCGGACAATTCATATCGCCTAATGATTATACAACAGTCGAGGCATACACAACATCCATTCAGAGCC TGCTAAATGTGTATCCTGAGATGGAAAATCTTGTAGAATGTCAAACAGTGAAGGACGCATTTTCTGAAATCCTTTTGTACCATTGCAAACCATTGAAGAG ATACATTCGAATGGTGTGGACATCGCTGGTGTTTCTCTCTTTAGTCATGGTGTTTTTGGTTCTGATATGGGCAAAGTTGGCTCAGCATGAGCAAGAACAC CATTCTTTAGATGGTTCTGTTAAGCCACATTCGTCTGTCGCAAAGGAACCGGACACTGGAACCAAAGATAGCTCAAACCATACTAGTCCAGTCTAG
AA sequence Show only first row Show all	>Potri.017G023400.2 pacid=42814373 polypeptide=Potri.017G023400.2.p locus=Potri.017G023400 ID=Potri.017G023400.2.v4.1 annot-version=v4.1 MGSTHATLLVVSLIFLVILGSNLIAGQTFSSNSSEPGTNVLAVNNVSQTVMQPDDTVRVDPLKDLKKYRGGYDIKNKHYWSSTMFTGVHGYVIGVIWLLG GIAYGGFLLATVFCCKNRRNEKLKKRLPCHKQCYLWPLLLAIFFTILAITASGLVLGGNAKFHSRAKTVVDIIIDTANNATKTMYNTTGAMKDMKESLGA SNQSAAVQASSFLTSTSEQLDVEAADIQRQARKNRRLIDKGLKIVYIVTTVTISLNLAALIALSVCGTLRLRRPLNILIAVCWILTVLCWIFFGLYFFLQ NFSRDSCTALESFQQNPYNNSLSSILPCDQLLSAKPVLFDVSQGIYSLVNQVNANLSTIQGLPYKVCNPFSAPPEYQFQPDKCPSNAIRIGDIPQVLKVF TCSSFDNGTCASGQFISPNDYTTVEAYTTSIQSLLNVYPEMENLVECQTVKDAFSEILLYHCKPLKRYIRMVWTSLVFLSLVMVFLVLIWAKLAQHEQEH HSLDGSVKPHSSVAKEPDTGTKDSSNHTSPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67550			unknown protein		Potri.017G023400 [exp]	0	1
AT3G53960			Major facilitator superfamily ...		Potri.008G061100 [exp]	4.69	0.7852
AT5G60700			glycosyltransferase family pro...		Potri.004G212000 [exp]	14.49	0.8109
AT1G30320			Remorin family protein (.1)		Potri.001G358600 [exp]	15.09	0.8085
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.002G150300 [exp]	18.33	0.8052
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.011G053400 [exp]	28.00	0.7364
					Potri.009G084666 [exp]	30.44	0.7393
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024500 [exp]	33.15	0.7993
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Potri.005G081300 [exp]	34.20	0.8002
AT5G34930			arogenate dehydrogenase (.1)		Potri.006G062600 [exp]	38.15	0.7821
AT1G58120			unknown protein		Potri.002G104500 [exp]	40.98	0.7987

Compare expression of checked genes

Potri.017G023400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.