Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44930 214 / 1e-63 Plant protein of unknown function (DUF247) (.1) AT2G28580 203 / 2e-59 Plant protein of unknown function (DUF247) (.1) AT4G31980 192 / 3e-54 unknown protein AT1G67150 176 / 2e-50 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G50150 164 / 5e-45 Plant protein of unknown function (DUF247) (.1) AT3G50160 154 / 1e-41 Plant protein of unknown function (DUF247) (.1) AT3G50170 154 / 3e-41 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT1G65985 148 / 1e-39 Plant protein of unknown function (DUF247) (.1) AT3G50140 149 / 2e-39 Plant protein of unknown function (DUF247) (.1) AT3G50120 149 / 2e-39 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G024866 [exp] 868 / 0 AT2G44930 211 / 6e-62 Plant protein of unknown function (DUF247) (.1) Potri.017G019400 [exp] 484 / 9e-170 AT2G44930 240 / 1e-73 Plant protein of unknown function (DUF247) (.1) Potri.017G019700 [exp] 481 / 1e-168 AT2G44930 220 / 6e-66 Plant protein of unknown function (DUF247) (.1) Potri.017G019300 [exp] 435 / 1e-150 AT2G44930 219 / 8e-66 Plant protein of unknown function (DUF247) (.1) Potri.007G132300 [exp] 374 / 7e-126 AT2G28580 221 / 1e-65 Plant protein of unknown function (DUF247) (.1) Potri.014G054200 [exp] 311 / 1e-101 AT2G28580 239 / 7e-73 Plant protein of unknown function (DUF247) (.1) Potri.014G054100 [exp] 228 / 9e-69 AT2G44930 192 / 1e-54 Plant protein of unknown function (DUF247) (.1) Potri.012G011800 [exp] 222 / 2e-67 AT2G44930 173 / 1e-48 Plant protein of unknown function (DUF247) (.1) Potri.014G053900 [exp] 218 / 3e-66 AT2G44930 214 / 1e-63 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039780 [exp] 186 / 7e-54 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 159 / 1e-43 AT4G31980 251 / 5e-76 unknown protein Lus10011501 [exp] 155 / 9e-42 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 152 / 3e-41 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 151 / 7e-41 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 147 / 3e-39 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10037762 [exp] 137 / 9e-36 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1) Lus10038339 [exp] 137 / 1e-35 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 137 / 1e-35 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10010064 [exp] 137 / 1e-35 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.017G024300.1 pacid=42813122 polypeptide=Potri.017G024300.1.p locus=Potri.017G024300 ID=Potri.017G024300.1.v4.1 annot-version=v4.1 ATGGGAGAGGACAAGGCAAGTACTCCAAACAAGGGAAAAGATATTGATGTGGGAAGTGCTTCAGGCATTGAGATGGCTACAAATCCCGATTATTATCAAA ATAGAGAGAGAGAGAAAGCTACAGATATTTTGGCAAAGCTGGATTCTGAGGTGAAACAGATGTCCTTTAAACGGAACGGTTCCGAGTGCTGCATCTACAG GGTGCCCGAACCGCTTCGAAACGTAAATTTGGAAGCCTACTCTCCACTACTGATTTCAATAGGTCCTCTTAACCGCCAAAATATAAGACTAGAGGCCATG GAAAAGGAGAAACTGAAATATTTCAAAAAGCTTACTGAACGGGATGGGATGGATAAGAAGAAAATTATTGATATTTTGATCAGCATTGAGAACCAAGAAG AGCGTCTCCGACACTGTTATTCAGAGAAATTCAATTTAATCAAGAGCCGTGATTTCGTAAAGATGATCCTGCTGGATGCTGTCTTCATCATTCAGTTTTT GTTGGAGTCAAAGGATCATGATAACGATCCTAAGAATTTTGAGCCCAGGATGACATTTGACATCCGAGAAGACTTGGTGCTACTTGAAAACCAACTGCCA TTCTTCATTATTCAGGAAATATATGACCAGGTCAATCCCCCTAGCCAGGATGGTACAACCATTCCTTTTCTTGATCTTGCAAAGTGTCATTTTGGAAAGC ACAAGTTTTCACAGGGGGCAGAAACCAGCCCGAGTGTAAAGGGAAGCAGGCATTTCACTGATTTACTAAGGAATTTGATGTTGAATGGAGCCATTCAGCG AAGTTATATTTTTTATCCTATCAAGCTGAAATATAGTGCGGTCATGCTTCGCAAGGCAGGAGTGAAGTTTCAGGTCACCCAAGACAAATGTTTGGTCAAC ATAACATTTGAGAAAGGAGTGTTGAAAATTCCACAGTTGGAAGTTGATCACAGCTTCGAACGTCTGGTACGAAATATCATGGCCTTGGAGCAGTGCTGCA ACCCGCGTGAAGCTTACGTATGCAGCTACATTAAGTTTATGGACCATCTTATCGACAGTGCAGAAGACGTGGGTTTGCTAGTCCGAAAGGGAATCATTCT CCACGGGCTAGGCGACGATGCCGCAGTTTCAAATATGATTAACCATTTTTGCAAAAATATTGGTGACAATTATACTTGTTTTGGTGATATCTCTAGAAAT ATAAGTCGCCACTATGAGAACCGCTTTAACCATACGAAGGCAACCTTGAAACTTATATATTTCCCCAATATTTGGAGAGGTACGGCAACTGTTGCAGCAG CTATCCTGCTGATCCTCACTTTCATACAGACTATAGCTTCCGTAAAATGGGCATTCTAG
AA sequence Show only first row Show all	>Potri.017G024300.1 pacid=42813122 polypeptide=Potri.017G024300.1.p locus=Potri.017G024300 ID=Potri.017G024300.1.v4.1 annot-version=v4.1 MGEDKASTPNKGKDIDVGSASGIEMATNPDYYQNREREKATDILAKLDSEVKQMSFKRNGSECCIYRVPEPLRNVNLEAYSPLLISIGPLNRQNIRLEAM EKEKLKYFKKLTERDGMDKKKIIDILISIENQEERLRHCYSEKFNLIKSRDFVKMILLDAVFIIQFLLESKDHDNDPKNFEPRMTFDIREDLVLLENQLP FFIIQEIYDQVNPPSQDGTTIPFLDLAKCHFGKHKFSQGAETSPSVKGSRHFTDLLRNLMLNGAIQRSYIFYPIKLKYSAVMLRKAGVKFQVTQDKCLVN ITFEKGVLKIPQLEVDHSFERLVRNIMALEQCCNPREAYVCSYIKFMDHLIDSAEDVGLLVRKGIILHGLGDDAAVSNMINHFCKNIGDNYTCFGDISRN ISRHYENRFNHTKATLKLIYFPNIWRGTATVAAAILLILTFIQTIASVKWAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44930			Plant protein of unknown funct...		Potri.017G024300 [exp]	0	1
AT2G44930			Plant protein of unknown funct...		Potri.017G024866 [exp]	1.00	0.9746
AT5G43240			Protein of unknown function (D...		Potri.001G247300 [exp]	1.73	0.9533
AT4G30520		SARK	SENESCENCE-ASSOCIATED RECEPTOR...		Potri.018G101300 [exp]	5.47	0.8822
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.014G106500 [exp]	6.92	0.9002	Pt-RCOMT1.3
AT2G36540			Haloacid dehalogenase-like hyd...		Potri.010G244400 [exp]	11.22	0.8787
AT5G45480			Protein of unknown function (D...		Potri.015G113700 [exp]	11.95	0.8798
AT1G53163			unknown protein		Potri.011G116600 [exp]	12.00	0.8878
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G102200 [exp]	14.69	0.8826
AT1G58170			Disease resistance-responsive ...		Potri.016G060900 [exp]	15.00	0.8743
AT3G50150			Plant protein of unknown funct...		Potri.013G146400 [exp]	15.87	0.8592

Compare expression of checked genes

Potri.017G024300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.