Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20320 481 / 1e-170 ABCI15, TGD2 ATP-binding cassette I15, trigalactosyldiacylglycerol2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G131700 [exp] 610 / 0 AT3G20320 511 / 0.0 ATP-binding cassette I15, trigalactosyldiacylglycerol2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007420 [exp] 518 / 0 AT3G20320 542 / 0.0 ATP-binding cassette I15, trigalactosyldiacylglycerol2 (.1.2) Lus10019360 [exp] 496 / 8e-177 AT3G20320 525 / 0.0 ATP-binding cassette I15, trigalactosyldiacylglycerol2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02470 [poplar] [flax] MlaD MlaD protein
Representative CDS sequence Show only first row Show all	>Potri.017G026100.2 pacid=42812912 polypeptide=Potri.017G026100.2.p locus=Potri.017G026100 ID=Potri.017G026100.2.v4.1 annot-version=v4.1 ATGGTTGGGAAGTCATTAGTCCAGGTTTCAAACTGTCCTCCTATGCTATCTTCGTCATCAATGATTAATGTATCTCATGGTTCTTCAAACTTCTTGCCTT TTCTTCTGGCAAGACCACAAAAGAAACTCATAGGGGTGCGAGCTATGTCAGCAGATACAGGACATAGCCAACAACCACCCTCTTCTTCGGAGAAAATGAA TGCACTTGCAGTTATTTTGGAGGTTCCTCGTAATATTTGGAGGCAAACATTGAAGCCGTTAAGTGATTTTGGGTTTGGTCGGAGGAGCATTTGGGAAGGT GGTGTTGGGTTGTTTCTTGTGTCTGGTGCAGTGCTTGTTGCACTCAGTTTGGCTTGGTTGAGGGGGTTTCTATTGCGGTCTCAATTCAGGAAGTACACGG CTGTGCTTGAATTTGCTCAAGCTAGTGGTATTTGCACAGGAACACAAGTTAGGATTAGAGGGGTCACTGTTGGTGAAGTTGTCCGTGTTAATCCTTCCTT GAAGAGTATAGAGGCTGTTGTGGAGGTTGAGGATGATAAAAATTTCATACCTAAAAATTCACTGATTGAGGTGAACCAGTCTGGTCTTCTCATGGAAACA ATGATTGATATCACTCCTCGTGATCCAATTCCAACACCTTCTGTTGGACCTCTTGATGCTGAATGTGTTAAAGAAGGTCTAATTGTTTGTGATAGGCAAA AATTAAAGGGACATCAAGGGGTGAGTTTGGATGCCTTGGTTGGGATATTCACTCGTATTGGACGAGAAGTAGAGGAAATTGGTGTTGCCAAGAGCTATTC ATTGGCTGAGCGTGTTGCTGCTGTTATTGAAGAGGCAAAGCCACTGCTTACAAAGATTAAAGCCATGACTGAAGATATTCATCCTTTGCTGTCTGAGGTT CGTGATAGTGGCCTGCTAAAAGAAGTTGAGGATTTAACCAGAAACTTATCACAAGCCTCTGAAGATTTAAGAAGGGCACATACATCCATTATGACACCAG AGAACACTGAGTTGATTCAAAAGTCCATTTACAGTTTGATTTTCACTATGAAAAACATTGAGAATATAAGCTCTGATATTCTGGGATTCACGGGTGATGA GGCTACAAGACGTAACTTGAAAGCACTTATAAAGTCCCTCAGCAGGTTATTATAA
AA sequence Show only first row Show all	>Potri.017G026100.2 pacid=42812912 polypeptide=Potri.017G026100.2.p locus=Potri.017G026100 ID=Potri.017G026100.2.v4.1 annot-version=v4.1 MVGKSLVQVSNCPPMLSSSSMINVSHGSSNFLPFLLARPQKKLIGVRAMSADTGHSQQPPSSSEKMNALAVILEVPRNIWRQTLKPLSDFGFGRRSIWEG GVGLFLVSGAVLVALSLAWLRGFLLRSQFRKYTAVLEFAQASGICTGTQVRIRGVTVGEVVRVNPSLKSIEAVVEVEDDKNFIPKNSLIEVNQSGLLMET MIDITPRDPIPTPSVGPLDAECVKEGLIVCDRQKLKGHQGVSLDALVGIFTRIGREVEEIGVAKSYSLAERVAAVIEEAKPLLTKIKAMTEDIHPLLSEV RDSGLLKEVEDLTRNLSQASEDLRRAHTSIMTPENTELIQKSIYSLIFTMKNIENISSDILGFTGDEATRRNLKALIKSLSRLL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Potri.017G026100 [exp]	0	1
AT4G04320			malonyl-CoA decarboxylase fami...		Potri.004G005500 [exp]	16.43	0.6583
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.003G093600 [exp]	20.04	0.6492
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Potri.015G012400 [exp]	24.08	0.7917
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Potri.004G138400 [exp]	31.41	0.6854
AT4G39860			unknown protein		Potri.005G076000 [exp]	33.67	0.6285
AT3G17950			unknown protein		Potri.015G036900 [exp]	44.36	0.6293
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Potri.018G066500 [exp]	45.23	0.6532
AT1G33250			Protein of unknown function (D...		Potri.011G147300 [exp]	102.24	0.6676
AT3G61200			Thioesterase superfamily prote...		Potri.014G078900 [exp]	116.65	0.5958
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Potri.002G012500 [exp]	117.43	0.6096

Compare expression of checked genes

Potri.017G026100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.