Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43410 660 / 0 FPA RNA binding (.1.2.3.4) AT4G12640 152 / 1e-37 RNA recognition motif (RRM)-containing protein (.1) AT2G42890 72 / 2e-12 AML2, MEI2 MEI2-like 2 (.1.2.3) AT5G07290 67 / 6e-11 AML4 MEI2-like 4 (.1) AT2G23350 63 / 7e-10 PABP4, PAB4 poly(A) binding protein 4 (.1) AT2G18510 60 / 4e-09 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G14100 59 / 1e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G54080 57 / 3e-08 UBP1A oligouridylate-binding protein 1A (.1.2) AT1G71770 57 / 6e-08 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT1G34140 55 / 2e-07 PAB1 poly(A) binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G131100 [exp] 1457 / 0 AT2G43410 633 / 0.0 RNA binding (.1.2.3.4) Potri.014G171900 [exp] 158 / 2e-39 AT4G12640 698 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Potri.007G028300 [exp] 62 / 7e-10 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G139300 [exp] 61 / 2e-09 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.001G304000 [exp] 61 / 5e-09 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.008G172100 [exp] 55 / 1e-07 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G215200 [exp] 52 / 8e-07 AT2G37340 266 / 6e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.016G081700 [exp] 52 / 9e-07 AT2G37340 268 / 2e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.009G099300 [exp] 52 / 1e-06 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007419 [exp] 890 / 0 AT2G43410 627 / 0.0 RNA binding (.1.2.3.4) Lus10019359 [exp] 880 / 0 AT2G43410 624 / 0.0 RNA binding (.1.2.3.4) Lus10016070 [exp] 149 / 2e-36 AT4G12640 554 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Lus10025188 [exp] 148 / 2e-36 AT4G12640 567 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Lus10010370 [exp] 71 / 3e-12 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10002835 [exp] 67 / 7e-11 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 66 / 1e-10 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10041728 [exp] 58 / 2e-08 AT2G18510 436 / 1e-153 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10011924 [exp] 54 / 4e-07 AT1G17370 578 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10027641 [exp] 53 / 1e-06 AT1G17370 569 / 0.0 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0616 [poplar] [flax] SPOC PF07744 [poplar] [flax] SPOC SPOC domain
Representative CDS sequence Show only first row Show all	>Potri.017G026600.1 pacid=42814138 polypeptide=Potri.017G026600.1.p locus=Potri.017G026600 ID=Potri.017G026600.1.v4.1 annot-version=v4.1 ATGGCGCCGCCGCCATTGAAATCAAACAAGGCAGGAACGCTAAAATCAGAGACAGACCAACAGAATTCAGCGGAAGTCAAAGAATCGAACAATCTATGGG TAGGGAATATATCGAGAGAAGTAGCAGATTCAGATCTAATGGAGTTGTTTGCGCAATTCGGTGCGCTTGATAGTGTAACGACGTATTCAGCAAGAAGTTA TGCGTTTGTGTACTTTAAACATGTTGAAGATGCTAAACAAGCTAAAGATGCCTTGCAAGGGAGCTCTCTTCGTGGAAATCAGATTAAAATCGAGTTTGCT AGACCGGCCAAACCTAGCAAGTATCTGTGGGTGGGTGGAATAAGCTCATCAGTTTCTGAGGAACGGCTGGAAGAAGAGTTTCTTAAGTTTGGTAAAATCG AGGATTTTAAGTTTCTTAGAGATCGAAAGATTGCATATGTTGAGTATTTGAAACTGGAAGATGCTTTTGAAGCGATGAAAAACATGAATGGAAAGAAAAT TGGTGGTGATCAGATTCGTGTGGATTTCCTTCGATCACAATCCACAAGAAGAGAACAGTTACCCGACTTTCTTGATTCAAGAGAGGATCAGTTTTCAGCA ACACATTATGGAGTTAGACGACCTCAGGTGCTACCTCAGTCTTTGGGAGGACGGAAGGACGGTCAACCCAGTAATATTTTGTGGGTAGGCTATCCTCCTT CTGTGCGGATTGATGAACAAATGCTACATAATGCCATGATTCTTTTTGGTGAGATTGAGAGAATCAAAAGCTTTCCTTCAAGGCATTATTCATTTGTGGA ATTTAGGAGTGTTGATGAAGCCCGGCGTGCTAAAGAAGGCCTGCAAGGGCGGCTTTTCAATGATCCTCGTATCACAATTATGTTCTCAAGTAGTGGGCTG GCACCTGGGAAAGAATACTCTAGTTTTTATCCTGGAGTTAAAGGTCCACGGCCAGAGATGTTTAATGAACATCCTTTCACACCCATGGATGTCATGTTCG ATCAACCTGGGGGGCCAGGAAATTTCGGCAGTCCATTTCCACCTAGTGGCATTCACAGACCTAACCTGCCAGTACGGCCTTTTGGTCCTCAAGGTGTTTT TGACACTTTACTTCAAGGTGGAGAGTTTAACGATTTAGCTCCATCACATAGCACTCGAGATCCTGCATCTGGGATCCTTCCTTCTCCTGCTTCTGGTATT AGGCCATCCATGAGGTCGGTTTCTAGTGGTTGGGATGTGCTTGATCCCAGCCAGTTTCCTAGGGAGGCCAAGCGATCAAGGATTGATGCTGCACCATCTA TTGATGATGATTCTTTTCCAGCTAGAAAGATGGATGATCGTGATCTGGGGTTGGACAAATCATATGGGCTAGGTCCTAGAGGTGCATATCCAAGTCTCCA GGGGAATAGCAGTCTTAGTCCAGTTGGTGGTAGGTTTAAGGGTCATTTTGATAATGATTTCATATGGCGTGGGATTGTGGCCAAGGGTGGAACGCCTGTA TGCCATGCCCGTTGTGTCCCAGTAGGGAAAGGGATAGAATCAGAGATACCTCATGTCATAAATTGCTCAGCAAGAACAGGGCTGGATATGCTGGCTAAAC ACTATGCTGAGGCAATTGGGTTTGACATTGTCTTCTTCTTGCCGGATAGTGAAGAAGATTTTGCTTCCTATACAGAATTTCTGCGTTATTTGGGTTTAAA GAATCGGGCTGGTGTAGCAAAGTTTGATGACGGGACCACTCTATTTCTTGTGCCCCCATCCGATTTCTTAAAGAATGTGTTGAAAGTTGCAGGACCTGAA CGATTGTATGGTGTAGTTCTCAAGTTGCCACAGCAGGTCCCTAGCAACACATCAATTCAGGAACAATTGCCTCAGCCCATCCATTTTTCTCAGTATACAG ACAATCAGATTCCACCACCAGAAGCTGACTACAATCAGCTCCGTCAGGGGGAGGAGCGAGGAATGCCAATCCATCATAACAGGTTTTTGCATGAGGATTC TAAGCTTCCTCCCAAATCATTTTATCCTTCGACAACAGAGTCCATTGCAGTGCCACCAGTTCCCCAAGAATATGCGCCAAATCTTAGTGCAGGACCATCC ACTGCGGGAGTTTTGACACCTGAGCTTATTGCTACTCTTGCAACTTTTTTGCCCACCAATAAGCAGTCATCTAGTTCAGAAAGTAATCAACCAGCATTGG GCTCTTCTATTGTCAGGCCACAATTTTCTTCAGTTGCACCTGACAGAGGAATTTCCTCTCAGGGATGGAAGCATGATAATCAAGTTTCTGGAAATGCAAG TCATTTACAAATGGGGAACCAGTTCAATTCTCAGGTTCAGGTTCAGTCTCAGTTCCAGCCTTACCCATCTGTCCCCAACACATATAGCCATTCAGCAACT GTGGTCCCTAGCAACAGTCAGATCCAAGATTCTACTGCCAGCCTATCGCATCAGAGTGTAACTTCATCCAGACCATTGACTAATTTTTCTATGCCTTCTC AAAGTGGACAATTTGCTTTGTCTCCACAGGTTCAGGGAGCGAATTATTCTCAGACCCAATCAGGGATCCCACCATCTGCAGACAGAGGGAACTGGGAGCT CCCCAATCAAGTGCAGCAATTCCAACCTGCTCTTTCTGGATCTGGGCAGGGCACCTCAGAGGTTGAGGCTGACAAGAATCAGCGCTATCAGTCAACTCTG CAGTTTGCAGCCAACCTCCTGCTCCAGATACAGCAGCAGCAGCAGCAGCAGAAGACTGCTACCAACCCAGCTGCACACGGATCTGGAAATCAGCAATGA
AA sequence Show only first row Show all	>Potri.017G026600.1 pacid=42814138 polypeptide=Potri.017G026600.1.p locus=Potri.017G026600 ID=Potri.017G026600.1.v4.1 annot-version=v4.1 MAPPPLKSNKAGTLKSETDQQNSAEVKESNNLWVGNISREVADSDLMELFAQFGALDSVTTYSARSYAFVYFKHVEDAKQAKDALQGSSLRGNQIKIEFA RPAKPSKYLWVGGISSSVSEERLEEEFLKFGKIEDFKFLRDRKIAYVEYLKLEDAFEAMKNMNGKKIGGDQIRVDFLRSQSTRREQLPDFLDSREDQFSA THYGVRRPQVLPQSLGGRKDGQPSNILWVGYPPSVRIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSGL APGKEYSSFYPGVKGPRPEMFNEHPFTPMDVMFDQPGGPGNFGSPFPPSGIHRPNLPVRPFGPQGVFDTLLQGGEFNDLAPSHSTRDPASGILPSPASGI RPSMRSVSSGWDVLDPSQFPREAKRSRIDAAPSIDDDSFPARKMDDRDLGLDKSYGLGPRGAYPSLQGNSSLSPVGGRFKGHFDNDFIWRGIVAKGGTPV CHARCVPVGKGIESEIPHVINCSARTGLDMLAKHYAEAIGFDIVFFLPDSEEDFASYTEFLRYLGLKNRAGVAKFDDGTTLFLVPPSDFLKNVLKVAGPE RLYGVVLKLPQQVPSNTSIQEQLPQPIHFSQYTDNQIPPPEADYNQLRQGEERGMPIHHNRFLHEDSKLPPKSFYPSTTESIAVPPVPQEYAPNLSAGPS TAGVLTPELIATLATFLPTNKQSSSSESNQPALGSSIVRPQFSSVAPDRGISSQGWKHDNQVSGNASHLQMGNQFNSQVQVQSQFQPYPSVPNTYSHSAT VVPSNSQIQDSTASLSHQSVTSSRPLTNFSMPSQSGQFALSPQVQGANYSQTQSGIPPSADRGNWELPNQVQQFQPALSGSGQGTSEVEADKNQRYQSTL QFAANLLLQIQQQQQQQKTATNPAAHGSGNQQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43410		FPA	RNA binding (.1.2.3.4)		Potri.017G026600 [exp]	0	1
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Potri.009G026200 [exp]	8.77	0.7383
AT5G65560			Pentatricopeptide repeat (PPR)...		Potri.006G124900 [exp]	10.90	0.7880
AT1G51965		ABO5	ABA Overly-Sensitive 5 (.1)		Potri.013G105000 [exp]	11.74	0.7751
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Potri.007G070100 [exp]	15.77	0.7718
AT3G11960			Cleavage and polyadenylation s...		Potri.006G197200 [exp]	17.66	0.7588
AT1G09730			Cysteine proteinases superfami...		Potri.002G105700 [exp]	20.61	0.7576
AT5G47940			unknown protein		Potri.001G265100 [exp]	23.76	0.6452
AT5G19400		SMG7	Telomerase activating protein ...		Potri.001G275400 [exp]	25.25	0.7364
AT3G03140			Tudor/PWWP/MBT superfamily pro...		Potri.013G081400 [exp]	25.61	0.7371
AT3G12590			unknown protein		Potri.008G052700 [exp]	29.39	0.7387

Compare expression of checked genes

Potri.017G026600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.