Plant FIBer expression Database

Potri.017G027000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G06110 545 / 0 SKIP16 SKP1/ASK-interacting protein 16 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G130900
[exp]
764 / 0 AT1G06110 557 / 0.0 SKP1/ASK-interacting protein 16 (.1)
Potri.015G078100
[exp]
62 / 2e-10 AT1G06110 48 / 3e-06 SKP1/ASK-interacting protein 16 (.1)
Potri.012G082300
[exp]
59 / 2e-09 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004805
[exp]
599 / 0 AT1G06110 542 / 0.0 SKP1/ASK-interacting protein 16 (.1)
Lus10027693
[exp]
62 / 2e-10 AT1G06110 49 / 2e-06 SKP1/ASK-interacting protein 16 (.1)
Lus10039964
[exp]
61 / 1e-09 AT5G62960 247 / 7e-78 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0159 E-set PF04379 DUF525 ApaG domain
Representative CDS sequence
>Potri.017G027000.3 pacid=42813811 polypeptide=Potri.017G027000.3.p locus=Potri.017G027000 ID=Potri.017G027000.3.v4.1 annot-version=v4.1
ATGGGTTTGGATTCAGTGGGAGATTTAGCTCTCAACATAATCTTAACAAAATTGGGTCCAAAAGAGACAGCAAAAGTATCATGTGTTAGCAAGAGGTTCA
AGGATTTAGCCTCTGAGGAATCTCTCTGGTCATTATTTTGCCTTCAAGATCTAGATCTATCTGCCCCTCTTGACCATCATGGAAACCCTTTACGCTCTTT
TAAGGCAACTTATAAGTTATGGAGAGAAGCTTTTTGCATGTATCCATGGTCCCTTGTAAAGCGAGTTAAAAGTTGTTGGGACAGACTCAAGAGCTGGTTG
ACCACAAACTTTCCTGAAGTTAAAGCTACTCTTGGAAGGGGTGCATCAGAAGGTGAGATTCAAGAGCTTGAAAGAATTTTGAAAGTTAAGCTGCCTCTTC
CCACGAGGCTTCTCTACCGCTTTCATGATGGTCAAAACTTAACAGGTGAAAATTTGAACACTGATGCGGCTGCCTGTCTATTGGGCCTGATAGGTGGCTA
CTGTTTTTATGATCACTTGGTTAATGTCTACTTATTACCCCTACATGAGGTGATCTTGGAAACACGGGAGATAGTACGCCACCTGGACTTACCCAATGGA
TCACAGTTTATTGTTGTGGCAGCCTCATCCTCAAACATTGGAAAGTTTTTCTTCCTGAACTGTTCTGATGGCCAACTTTATGTTGGGACTCAGAATCTTC
TGACAATTGGAGAAATGATCCCATGTGTACCTCAGACATTAATTAGTCCAGTCCATGATTTCAACATAGACCAACAACAGGATGCTATGTTGTTATGGCT
AGAAGAACATGGCCATCGCTTGCACAATGGCATGATCAAACTTCGGGATGAAGGAAATATCAAAAGTATCTCTCTTTTTCCAGAAGAATCTCCTCTCTGC
TCAACTGCTGTAACCAATGGTGTAAAGGTCCGCGCATCTGCTATTTTTGTGCCAGAGGCTGTTGATCTCTCTAGAAAATACTTGTTTGCTTATTCAATCC
GCATGTCCCTTCCACCAGAAGGATGCATCATCAGTGGAATGCGCTTCAGCTCTTGCCAACTGCATTTGAGGCACTGGGTTATCAGCGCCGATGATACTGT
CGTATCTAATGTCAATGCAGAGGCTGTGATAGGCAAGTTCCCACTCTTGCTTCCAGGTGAGAAAGAATTTGTTTATGAGAGTTGCACACCTCTGCGATCT
CCTACTGGCTCTGTTGAAGGTTCTTTCACATTTGTCCCTGGCAGATTGATAGATCCAAAAGGAATGCCATTTGAAGCTGAAGTTGCCCGGTTTCCCCTCC
AACTGCCGGACTACATTTTCTGA
AA sequence
>Potri.017G027000.3 pacid=42813811 polypeptide=Potri.017G027000.3.p locus=Potri.017G027000 ID=Potri.017G027000.3.v4.1 annot-version=v4.1
MGLDSVGDLALNIILTKLGPKETAKVSCVSKRFKDLASEESLWSLFCLQDLDLSAPLDHHGNPLRSFKATYKLWREAFCMYPWSLVKRVKSCWDRLKSWL
TTNFPEVKATLGRGASEGEIQELERILKVKLPLPTRLLYRFHDGQNLTGENLNTDAAACLLGLIGGYCFYDHLVNVYLLPLHEVILETREIVRHLDLPNG
SQFIVVAASSSNIGKFFFLNCSDGQLYVGTQNLLTIGEMIPCVPQTLISPVHDFNIDQQQDAMLLWLEEHGHRLHNGMIKLRDEGNIKSISLFPEESPLC
STAVTNGVKVRASAIFVPEAVDLSRKYLFAYSIRMSLPPEGCIISGMRFSSCQLHLRHWVISADDTVVSNVNAEAVIGKFPLLLPGEKEFVYESCTPLRS
PTGSVEGSFTFVPGRLIDPKGMPFEAEVARFPLQLPDYIF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G06110 SKIP16 SKP1/ASK-interacting protein 1... Potri.017G027000
[exp]
0 1
AT5G07960 unknown protein Potri.012G065500
[exp]
2.23 0.7586
AT1G22920 CSN5A, JAB1, AJ... ARABIDOPSIS JAB1 HOMOLOG 1, CO... Potri.018G006100
[exp]
4.89 0.7296 AJH1.3
AT3G52390 TatD related DNase (.1.2) Potri.016G068400
[exp]
8.66 0.7333
AT1G29150 RPN6, ATS9 REGULATORY PARTICLE NON-ATPASE... Potri.008G042400
[exp]
8.77 0.7063 ATS9.3
AT2G43790 ATMAPK6, MAPK6,... MAP kinase 6 (.1) Potri.007G139800
[exp]
11.95 0.6940 Pt-MPK6.1
AT1G29150 RPN6, ATS9 REGULATORY PARTICLE NON-ATPASE... Potri.010G164200
[exp]
14.69 0.7029 ATS9.1
AT2G30050 transducin family protein / WD... Potri.015G068900
[exp]
16.88 0.6473
AT1G26340 B5 #6, B5#6, AT... ARABIDOPSIS CYTOCHROME B5 ISOF... Potri.010G156900
[exp]
19.23 0.6972 B5.2
AT1G34760 RHS5, GF14OMICR... ROOT HAIR SPECIFIC 5, general ... Potri.005G164500
[exp]
23.00 0.6761
AT3G05530 ATS6A.2, RPT5A regulatory particle triple-A A... Potri.013G016800
[exp]
23.74 0.6950 RPT5.2

Potri.017G027000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.