Plant FIBer expression Database

Potri.017G027500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43400 951 / 0 ETFQO electron-transfer flavoprotein:ubiquinone oxidoreductase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025584
[exp]
404 / 1e-134 AT2G43400 277 / 8e-86 electron-transfer flavoprotein:ubiquinone oxidoreductase (.1)
Lus10027045
[exp]
211 / 5e-61 AT2G43400 228 / 1e-71 electron-transfer flavoprotein:ubiquinone oxidoreductase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0344 4Fe-4S PF05187 ETF_QO Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S
CL0063 NADP_Rossmann PF13450 NAD_binding_8 NAD(P)-binding Rossmann-like domain
Representative CDS sequence
>Potri.017G027500.1 pacid=42814327 polypeptide=Potri.017G027500.1.p locus=Potri.017G027500 ID=Potri.017G027500.1.v4.1 annot-version=v4.1
ATGCAGAGACTCATTTCACTTCGTTCAAAGTCCAATTCTCTTAAATCTTTGTTCAATCCATTGAAATCACCTCAAAAACACTCAATTTCTGCAGATTGGT
CTTCTTGTTTCCATCAAAGCTGGAATCTTATAGCCTCAAAAGGATGCTTCAGCCGGGTTTTTTCATATGGGCTTTGGCCAAGTTGTGCTAAAATGAGGAA
TTTTGATAAAAATCAAGGTTTTGTTAGGAGGTTTAGTAGTGAAGCTCAAAGGGAGTCTATAGAGTATGATGTTGTGATTGTTGGTGCTGGACCGGCTGGA
TTATCAGCTGCAATAAGATTGAAGCAGTTGTGTAGTGAAAAGGGTGTGGATTTATCGGTTTGTGTTGTTGAGAAAGGCCCGGAAGTAGGTGCTCATATCT
TATCCGGCAATGTGTTTGAGCCCCGAGCACTGGATGAACTTCTACCGCATTGGAAAGAGGAAGAGGCACCAATCAATGTCCCTGTATCTTCTGACAAGTT
TTGGTTTCTTACAAAGGATCGTGCCTTTTCTCTTCCATGTCCTTTTGATAACAAGGGGAACTATGTTATAAGTTTAAGTCAATTAGTGCGTTGGATGGGG
ATAAAAGCTGAAGAATTTGGAGTTGAGATATATCCTGGCTTTGCAGCAAGTGAGATCTTATATGATGCAAATGATAGTGTTGTTGGCATTGGAACTAACG
ATATGGGAATTGCCAAAGATGGTTCTAAGAAGGATACTTTTCAACGTGGTGTAGAGCTGAAAGGTCGCGTAACGCTTCTAGCTGAAGGTTGTAGAGGATC
TTTATCAGAGAAACTAATTAAAAAATACAAATTGAGAGAGAAGGGGCATGCTCAACATCAGACTTATGCTTTAGGAATTAAAGAGGTTTGGGAAATTGAT
GAGAGCAAGCATAAACCTGGTGCTGTTCTTCACACGATAGGATGGCCTTTGGATCAGAAAACATATGGGGGGTCATTTTTGTACCATATGAAAGATAGGC
AGGTTTCAATCGGTTTGGTGGTTGCTTTGAATTATCACAATCCTTACTTGAACCCTTACGAGGAATTTCAGAAATTTAAGCATCATCCTGCCATCAGACC
CCTTCTGGAAGGGGGAACTGTGATCCAATATGGGGCTCGCACTTTAAATGAAGGTGGTATTCAGTCCATTCCATATCCAGTTTTCTCGGGAGGAGCAATT
ATTGGATGTTCAGCTGGTTTCTTAAATGTACCAAAAATAAAGGGAACACACACTGCAATGAAATCAGGAATGCTAGCAGCAGAAGCAGCATTTGGTTCTC
TTAGGGAAGGCACAAGCTTGAAATCATATTGGGAAACTTTAAGGAGTTCTTGGATATGGGATGAACTCCACCAAGCTCGAAACTATCGACCCGCTTTTGA
ATATGGGGTTATTCCTGGAATGGCTATTAGTGCATTAGAACGCTACATACTAAAAGGAAGGTCCCCATTCACGCTGAAACATGGGAAACCTGATCACGAG
TCAACAAATGCTGCACGGTTACACTCTCCAATTGAATATCCAAAGCCTGATGGAGTTTTTTCTTTTGATGTGCCAACCTCCCTCCACAGGAGCAACACTA
ATCATGACCACGATCAGCCTGCTCACCTTCGTTTGAAGGACCCCAAGATTCCTGAGACTCTGAATTTGCCAGAATATGCTGGACCAGAGTCACGATATTG
TCCTGCTCGTGTATATGAGTACATCTCCGATGAGAACAGTCAGCTGAAGTTACAGATCAATGCCCAGAATTGCCTGCATTGCAAGGCATGTGATATCAAA
GACCCAAAGCAAAACATTGAATGGACAGTGCCAGAAGGGGGAGGTGGCCCAGGCTACTCAGTCATGTAG
AA sequence
>Potri.017G027500.1 pacid=42814327 polypeptide=Potri.017G027500.1.p locus=Potri.017G027500 ID=Potri.017G027500.1.v4.1 annot-version=v4.1
MQRLISLRSKSNSLKSLFNPLKSPQKHSISADWSSCFHQSWNLIASKGCFSRVFSYGLWPSCAKMRNFDKNQGFVRRFSSEAQRESIEYDVVIVGAGPAG
LSAAIRLKQLCSEKGVDLSVCVVEKGPEVGAHILSGNVFEPRALDELLPHWKEEEAPINVPVSSDKFWFLTKDRAFSLPCPFDNKGNYVISLSQLVRWMG
IKAEEFGVEIYPGFAASEILYDANDSVVGIGTNDMGIAKDGSKKDTFQRGVELKGRVTLLAEGCRGSLSEKLIKKYKLREKGHAQHQTYALGIKEVWEID
ESKHKPGAVLHTIGWPLDQKTYGGSFLYHMKDRQVSIGLVVALNYHNPYLNPYEEFQKFKHHPAIRPLLEGGTVIQYGARTLNEGGIQSIPYPVFSGGAI
IGCSAGFLNVPKIKGTHTAMKSGMLAAEAAFGSLREGTSLKSYWETLRSSWIWDELHQARNYRPAFEYGVIPGMAISALERYILKGRSPFTLKHGKPDHE
STNAARLHSPIEYPKPDGVFSFDVPTSLHRSNTNHDHDQPAHLRLKDPKIPETLNLPEYAGPESRYCPARVYEYISDENSQLKLQINAQNCLHCKACDIK
DPKQNIEWTVPEGGGGPGYSVM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G43400 ETFQO electron-transfer flavoprotein... Potri.017G027500
[exp]
0 1
AT1G01140 PKS6, CIPK9, Sn... SNF1-RELATED PROTEIN KINASE 3.... Potri.014G104200
[exp]
1.41 0.8977 CIPK9.2
AT5G38280 PR5K PR5-like receptor kinase (.1) Potri.004G014200
[exp]
1.41 0.9068
AT1G52240 PIRF1, ATROPGEF... phytochrome interacting RopGEF... Potri.003G052800
[exp]
2.44 0.8756
AT4G32250 Protein kinase superfamily pro... Potri.018G026400
[exp]
3.87 0.8626
AT1G58340 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWAR... Potri.002G107200
[exp]
4.58 0.8551 Pt-ZF14.1
AT1G11340 S-locus lectin protein kinase ... Potri.011G036100
[exp]
6.00 0.8564
AT4G32300 SD2-5 S-domain-2 5 (.1) Potri.004G014450
[exp]
6.63 0.8395
AT5G33280 Voltage-gated chloride channel... Potri.006G064000
[exp]
7.74 0.8257
AT5G41130 Esterase/lipase/thioesterase f... Potri.001G324400
[exp]
10.24 0.8235
AT4G32300 SD2-5 S-domain-2 5 (.1) Potri.004G014636
[exp]
13.41 0.8369

Potri.017G027500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.