Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06050 398 / 6e-140 Protein of unknown function (DUF1336) (.1) AT5G10750 259 / 3e-85 Protein of unknown function (DUF1336) (.1) AT5G24990 203 / 8e-64 Protein of unknown function (DUF1336) (.1) AT5G25010 201 / 7e-63 Protein of unknown function (DUF1336) (.1) AT5G35180 183 / 3e-52 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT5G25020 167 / 6e-50 Protein of unknown function (DUF1336) (.1) AT5G45560 175 / 2e-49 Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (.1) AT4G19040 175 / 2e-49 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT2G28320 166 / 5e-46 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) AT3G54800 163 / 3e-45 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G130400 [exp] 551 / 0 AT1G06050 390 / 1e-136 Protein of unknown function (DUF1336) (.1) Potri.018G014234 [exp] 244 / 2e-79 AT5G10750 428 / 5e-152 Protein of unknown function (DUF1336) (.1) Potri.018G113100 [exp] 187 / 1e-53 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Potri.003G100600 [exp] 176 / 7e-50 AT4G19040 1182 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.001G132900 [exp] 174 / 4e-49 AT4G19040 1159 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.008G213000 [exp] 174 / 7e-49 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.010G223400 [exp] 166 / 3e-46 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.008G038800 [exp] 164 / 2e-45 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.009G011200 [exp] 163 / 3e-45 AT2G28320 1071 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008154 [exp] 413 / 5e-146 AT1G06050 362 / 5e-126 Protein of unknown function (DUF1336) (.1) Lus10042428 [exp] 230 / 7e-74 AT5G10750 444 / 6e-158 Protein of unknown function (DUF1336) (.1) Lus10026242 [exp] 227 / 1e-72 AT5G10750 440 / 1e-156 Protein of unknown function (DUF1336) (.1) Lus10026907 [exp] 216 / 1e-68 AT5G10750 416 / 1e-147 Protein of unknown function (DUF1336) (.1) Lus10005308 [exp] 185 / 1e-56 AT1G06050 191 / 3e-59 Protein of unknown function (DUF1336) (.1) Lus10040015 [exp] 191 / 3e-55 AT5G35180 1034 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019591 [exp] 189 / 1e-54 AT5G35180 931 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019068 [exp] 177 / 4e-51 AT5G35180 589 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10007596 [exp] 173 / 1e-48 AT4G19040 1217 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10012149 [exp] 172 / 3e-48 AT4G19040 1227 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [poplar] [flax] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Potri.017G027700.2 pacid=42813387 polypeptide=Potri.017G027700.2.p locus=Potri.017G027700 ID=Potri.017G027700.2.v4.1 annot-version=v4.1 ATGGCCAGCCTCGGTGATGGGGAGCATCAATGGTTAGAGAGAGTAAAATCAGAGGGGGCTGTTCCACTACTTGATCCAGATAATTGTTCAAATGGCTGGG CATCTCCACCTGGAGACTATTTCATGGTAAGAGGTCCAGAGTATTTGACAACTAAGACTAAAATCCCTGGTGGAGAATATCTTTTTAAGCCTCTTGGATT TGACTGGATTAAAGGGTCTAATAAGATTGCAGAGGTTTTGAAGAATCAAAAAAACCGTGTGAGGAAGGTTATTGATGAAGAGTTTCCAGATGGTGATAAG CCTTTTGTTTGGGCATTTAATCTACAACTCCCAGGTAAGGACAACTATAGTGCTGTGGCATATTTTGTAGCCACAGAGCCATTTCCTGAGGGATCTTTAG TTGATCAGTTCTTGAATGGTGATGATGGGTTTAGAAATTCAAGGCTTAAACTGATTGCCAACATTGTCAAAGGCCCCTGGATAGTAAGAAAGGCAGTCGG AGAGCAGGCTGTGTGCATAATTGGGCGTGCCCTTTCTTCCAAGTACTGTGTTGCAGAGAATTTCTTCGAAGTGGATGTGGATATCGGATCTTCAATGGTT GCAAGTGCAATAGTTCATTTGGCGTTTGGTTACATCTCAATGTTGACTGTTGACCTGGCTTTTCTCATCGAGGCTCAAAGTGAGTCAGAGCTTCCAGAAC GACTTTTAGGTGCCGTCAGATTTTCTGATCTAAACCCTGCTTGTGCTTCCTTATATGAACTGTCATATGGAAGTACTGATAATTTGCAGTCCTCATTGCC GACTCGCTTATGGAAGTCAATTGGACAGGGGTTTTCTCAACTCCTTCATCCCGTGCCAGGGGCTCAAGAAAATAGTTCTGCCTCTGGCACAACCCATGGT AATGAAACTTCTGAGCTCAAAGAGGGAAGTGAAGACACAAAGAAATGGTAA
AA sequence Show only first row Show all	>Potri.017G027700.2 pacid=42813387 polypeptide=Potri.017G027700.2.p locus=Potri.017G027700 ID=Potri.017G027700.2.v4.1 annot-version=v4.1 MASLGDGEHQWLERVKSEGAVPLLDPDNCSNGWASPPGDYFMVRGPEYLTTKTKIPGGEYLFKPLGFDWIKGSNKIAEVLKNQKNRVRKVIDEEFPDGDK PFVWAFNLQLPGKDNYSAVAYFVATEPFPEGSLVDQFLNGDDGFRNSRLKLIANIVKGPWIVRKAVGEQAVCIIGRALSSKYCVAENFFEVDVDIGSSMV ASAIVHLAFGYISMLTVDLAFLIEAQSESELPERLLGAVRFSDLNPACASLYELSYGSTDNLQSSLPTRLWKSIGQGFSQLLHPVPGAQENSSASGTTHG NETSELKEGSEDTKKW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06050			Protein of unknown function (D...		Potri.017G027700 [exp]	0	1
AT1G73760			RING/U-box superfamily protein...		Potri.015G043900 [exp]	1.41	0.7979
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Potri.001G163700 [exp]	1.41	0.7834	Pt-ERF1.3
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Potri.017G081500 [exp]	4.89	0.6902
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Potri.004G035500 [exp]	5.74	0.7611
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Potri.010G209400 [exp]	8.24	0.7249
AT3G54190			Transducin/WD40 repeat-like su...		Potri.013G091700 [exp]	11.66	0.6407
AT3G51840		ATG6, ATSCX, AC...	acyl-CoA oxidase 4 (.1)		Potri.016G118000 [exp]	12.12	0.7054
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.001G302000 [exp]	16.88	0.6791
AT1G22540			Major facilitator superfamily ...		Potri.013G107050 [exp]	16.91	0.6875
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Potri.010G192600 [exp]	18.43	0.6741

Compare expression of checked genes

Potri.017G027700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.