Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59520 434 / 1e-155 ATRBL13 RHOMBOID-like protein 13 (.1) AT3G58460 52 / 1e-07 ATRBL15 RHOMBOID-like protein 15 (.1.2) AT3G17611 51 / 3e-07 ATRBL14 RHOMBOID-like protein 14 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G130300 [exp] 481 / 2e-174 AT3G59520 441 / 1e-158 RHOMBOID-like protein 13 (.1) Potri.006G197900 [exp] 57 / 4e-09 AT3G58460 561 / 0.0 RHOMBOID-like protein 15 (.1.2) Potri.010G004600 [exp] 44 / 9e-05 AT3G17611 352 / 4e-121 RHOMBOID-like protein 14 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008156 [exp] 447 / 9e-161 AT3G59520 447 / 8e-161 RHOMBOID-like protein 13 (.1) Lus10005310 [exp] 313 / 5e-109 AT3G59520 326 / 3e-114 RHOMBOID-like protein 13 (.1) Lus10032095 [exp] 49 / 1e-06 AT3G17611 339 / 2e-116 RHOMBOID-like protein 14 (.1.2.3) Lus10021092 [exp] 49 / 3e-06 AT3G58460 535 / 0.0 RHOMBOID-like protein 15 (.1.2) Lus10014591 [exp] 48 / 5e-06 AT2G04160 716 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10017221 [exp] 44 / 0.0001 AT1G03475 557 / 0.0 LESION INITIATION 2, Coproporphyrinogen III oxidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [poplar] [flax] Rhomboid-like PF01694 [poplar] [flax] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Potri.017G027800.3 pacid=42813900 polypeptide=Potri.017G027800.3.p locus=Potri.017G027800 ID=Potri.017G027800.3.v4.1 annot-version=v4.1 ATGGGGAGGCCATTGTTTTATGAGATTGTGGAAAAACCAGCTACAAGTTGTATAATTGGAATATGTAGTGCTATATGGTTTTATATACAGAAGAAAAATA TCGGGTACTCTCATGTGGGATTGAGTTATGAAAATGCAGTTGAAGGGCACCATTGGAGGATAATTACCTCTGCCTTTTCACATATTAGTGTTATTCATCT TGTTTTCAATATGAGCGCACTTTGGAGTCTAGGGGTTGTAGAACAGTTGGGGCACATTGGCCTTGGAATGGCTTATTATCTTCACTACACACTTGTGTTG GTCGTATTGTCTGGGGCACTAGTACTGGGGATGTACCATATATTGATACAAAGATTCAAGCTAGAGTATTTTCGGAGAGTGACAGCTGTTGGGTACTCTT GTGTTGTATTTGGGTGGATGACAATTCTTTCTGTGAAGCAACCATCCTCGAAGTTGGATCTTTTTGGATTCCTTTCACTTCCTATCAGTTTTGCGCCTTT TGAGTCATTGATTTTTACATCAATTATTGTTCCACAAGCGAGTTTTCTTGGCCATTTATCAGGAATTGTTGTTGGATATGCTATAGCATGGGGTTTGATA CATGGGATGAACAATTTCTGGGCAATATCAATGCTTGGATGGATTGTGCTTTTTTCTGTGGTCAGTTTGAAGCGGTCAGGTGCTTATGATTTTGATTTTA TTGAGATTGAATCTGTTATGGATCCTTCCTTGCCTTCTGTGCGGTTTCCTGGAACTGGTAGAGCATTGCAGATGAGTGCACTACCAGTTGAAGGTGTTGA AATCGTTTAA
AA sequence Show only first row Show all	>Potri.017G027800.3 pacid=42813900 polypeptide=Potri.017G027800.3.p locus=Potri.017G027800 ID=Potri.017G027800.3.v4.1 annot-version=v4.1 MGRPLFYEIVEKPATSCIIGICSAIWFYIQKKNIGYSHVGLSYENAVEGHHWRIITSAFSHISVIHLVFNMSALWSLGVVEQLGHIGLGMAYYLHYTLVL VVLSGALVLGMYHILIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIVVGYAIAWGLI HGMNNFWAISMLGWIVLFSVVSLKRSGAYDFDFIEIESVMDPSLPSVRFPGTGRALQMSALPVEGVEIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Potri.017G027800 [exp]	0	1
AT1G16290			unknown protein		Potri.010G172300 [exp]	5.19	0.8170
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Potri.013G028200 [exp]	5.47	0.7760
					Potri.015G138050 [exp]	7.07	0.8027
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Potri.008G197400 [exp]	7.34	0.7911
AT1G08315			ARM repeat superfamily protein...		Potri.003G195400 [exp]	7.41	0.7646
AT5G24870			RING/U-box superfamily protein...		Potri.018G005600 [exp]	7.93	0.7681
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.011G132700 [exp]	9.79	0.7629
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Potri.005G040300 [exp]	16.43	0.7560
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.006G011701 [exp]	17.20	0.7801
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Potri.014G081100 [exp]	18.16	0.7646

Compare expression of checked genes

Potri.017G027800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.